Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02690 ATGAGTTTTGGGGGGTTCCTTGAGAACAAACAAGGTGGTGGTGGTGCCAGAATGGTGGCTGAAATACCTTACAGCAACGGTTCTTCAAACCACCACCACCATCACCACCACATGGAAGCAGCAACAGCAGCGACAATAATGGCTTCTGGTGCAATCTCACATCCTCATTTGGCCAAATCCATGTTCAACAACTCACCTGCTCTCTCTCTAGCACTTCAAACAAATATGGATGGGCAAGGGGATGTGATGAACAATAATAACAGGTTGTTGGTGGGTGATAATAATAATAATAACAATAATAATACTACTAATAATAATAATTATGAGGGAAACATGATGAGCAACAACAATGGTTTGAGAAGGAGCAGGGAAGAAGAGCATGAAAGCAGATCTGGGAGTGATAACATGGACGGTGCCTCAGGTGATGATGATCTTGATGCTGCCGACATCAACAACAACAAACCCAGGAAGAAGCGTTACCACCGACACACCCCTCAGCAAATTCAAGAACTTGAAGCGCTGTTCAAGGAGTGTCCTCACCCTGATGAGAAGCAAAGGCTTGAACTAAGCAAAAGGCTATGCTTGGAAACAAGGCAAGTGAAGTTTTGGTTCCAAAATAGAAGAACTCAAATGAAGACACAATTGGAACGCCATGAGAACACATTACTCCGGCAAGAGAACGATAAGCTTAGAGCAGAAAACATGTCATTGAGGGAAGCAATGAGGAACCCCATTTGCACAAACTGTGGAGGACCAACCATGATTGGTGAAATCTCATTGGAAGAACAGCATCTACGAATCGAAAATGCGAGGTTAAAGGACGAGTTAGACCGGGTGTGCGCACTCGCCGGAAAGTTCTTAGGCCGGCCCATTCCCTCAATTGCTCCTCATCCTCCATTACCAAACTCAAGCTTAGAGCTTGGAGTTGGAAATAACAATAACAGCAGCAATGGAGGCTTTGTTGTGGGTTCAACAATGCCATTAGGGCCTGATTTTGTTGGAATGGGCATTTCATCAAACACCTTAGGGGTGTTATCACCAACACCACCAAGCAGGGGAATTGCGACAACAAATGGGATGAATTCTTCAAATACATCATCTGGGTATGAGAGATCAATGGTTTTGGAGCTTGCATTGGGTGCAATGGATGAGTTGGTGAAGATGGCACAAAGTGGAGAACCACTTTGGATAAGGGGAATGGAAATGGGAGGAAGGGAAGTGTTGAACCATGAAGAGTACAGTAGAACAGTGACACCTTGCATTGGTTTGAGACCCAATGGGTTTGTCTCTGAGGCTTCTAGGGAAACTGCCATTGTCATCATCAATAGCTTGCCTCTTGTTGACACTTTAATGGACTCAAATCGATGGTCAGAAATGTTCCCTTGTATGGTTGCAAGAACTTCTACAACAGAAGTGATATCTAGTGGAATAAATGGAACTAGAAACGGTGCACTTCAACTTATGCAAGCTGAACTGCAAGTGCTTTCACCATTGGTTCCTGTTAGAGAGGTCAATTTTCTAAGATTTTGCAAACAACATGCAGAAGGGGTTTGGGCTGTGGTTGATGTGTCCATAGACACCATTAGAGAACCTTCTTCTGCTGCACCAACTTTTGTTAGCTGTAGAAGACTCCCTTCTGGTTGTGTTATACAAGACATGCCTAATGGTTACTCTAAGGTGACATGGGTGGAGCATGCAGAATATGATGAAAGCCAAATCCACGAGCTGTATAGGCCATTGGTGAGTTCAGGAATGGGGTTTGGTGCACAACGTTGGATTGCAACTCTTCAACGCCAATGCGAGTGCCTAGCCATCTTAATGTCCTCTGCTGTTTCCCCTCCTGAACACTCTGCAATAACATCGAGTGGAAGGCGTAGCATGCTGAAGCTGGCGCAACGCATGACCAACAACTTCTGTGCTGGTGTTTGTGCCTCAACGGTGCACAAATGGAACAAGCTCAACGCCGGCAACTTCGGCGAAGACGTGAGGGTGATGACAAGGAAGAGCCTTGATGATCCCGGGGAGCCTCCTGGGATCGTCCTGAGCGCAGCCACATCAGTGTGGCTGCCAGTCTCGCCCCAGAGGCTCTTTGATTTCCTCCGCGACGAGAGGCTGAGGAGCGAGTGGGACATACTTTCCAATGGCGGACCCATGCAGGAGATGGCTCACATTGCCAAGGGACAAGACCATGGCAACTGTGTTTCACTACTACGAGCCAGTGCTATGAATTCAAATCAGAGTAGCATGTTGATATTGCAAGAGACATGCACAGACGCGTCTGGGTCGCTTGTAGTGTACGCGCCAGTGGACATTCCAGCCATGCATTTGGTCATGAATGGCGGTGACTCGGCTTACGTGGCGCTTCTGCCATCTGGATTCGCCGTTGCACCTGACGGATCTAGTGGCAGAAATGACCACAATACCGTGTCACAACCCGGAGGTGGGTCACTTCTCACGGTGGCGTTTCAGATACTCGTGAACAGCCTCCCTACGGCGAAACTCACGGTGGAGTCGGTGGAGACGGTGAACAACCTCATCTCATGTACGGTTCAGAAGATAAAAGCGGCACTTCAATCCGAGGGTTGA 2586 0.4733 MSFGGFLENKQGGGGARMVAEIPYSNGSSNHHHHHHHMEAATAATIMASGAISHPHLAKSMFNNSPALSLALQTNMDGQGDVMNNNNRLLVGDNNNNNNNNTTNNNNYEGNMMSNNNGLRRSREEEHESRSGSDNMDGASGDDDLDAADINNNKPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSLREAMRNPICTNCGGPTMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPIPSIAPHPPLPNSSLELGVGNNNNSSNGGFVVGSTMPLGPDFVGMGISSNTLGVLSPTPPSRGIATTNGMNSSNTSSGYERSMVLELALGAMDELVKMAQSGEPLWIRGMEMGGREVLNHEEYSRTVTPCIGLRPNGFVSEASRETAIVIINSLPLVDTLMDSNRWSEMFPCMVARTSTTEVISSGINGTRNGALQLMQAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIREPSSAAPTFVSCRRLPSGCVIQDMPNGYSKVTWVEHAEYDESQIHELYRPLVSSGMGFGAQRWIATLQRQCECLAILMSSAVSPPEHSAITSSGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNFGEDVRVMTRKSLDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCTDASGSLVVYAPVDIPAMHLVMNGGDSAYVALLPSGFAVAPDGSSGRNDHNTVSQPGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQSEG 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02690 861 SUPERFAMILY Bet v1-like 369 602 - -
Aip04g02690 861 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 109 858 IPR042160 -
Aip04g02690 861 SUPERFAMILY Bet v1-like 630 854 - -
Aip04g02690 861 ProSiteProfiles START domain profile. 367 605 IPR002913 GO:0008289
Aip04g02690 861 Gene3D - 445 600 IPR023393 -
Aip04g02690 861 Pfam Homeodomain 157 212 IPR001356 GO:0003677
Aip04g02690 861 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 109 858 - -
Aip04g02690 861 MobiDBLite consensus disorder prediction 79 164 - -
Aip04g02690 861 Pfam START domain 377 602 IPR002913 GO:0008289
Aip04g02690 861 Gene3D - 146 230 - -
Aip04g02690 861 SUPERFAMILY Homeodomain-like 140 214 IPR009057 -
Aip04g02690 861 MobiDBLite consensus disorder prediction 119 133 - -
Aip04g02690 861 ProSitePatterns 'Homeobox' domain signature. 189 212 IPR017970 GO:0000981|GO:0006355
Aip04g02690 861 MobiDBLite consensus disorder prediction 79 118 - -
Aip04g02690 861 ProSiteProfiles 'Homeobox' domain profile. 154 214 IPR001356 GO:0003677
Aip04g02690 861 Coils Coil 208 243 - -
Aip04g02690 861 SMART START_1 376 602 IPR002913 GO:0008289
Aip04g02690 861 CDD START_ArGLABRA2_like 371 601 - -
Aip04g02690 861 CDD homeodomain 156 214 IPR001356 GO:0003677
Aip04g02690 861 MobiDBLite consensus disorder prediction 1 39 - -
Aip04g02690 861 SMART HOX_1 155 218 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02690 Aip-Chr4 116039467 116046852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02690 1 860 Homeobox Transcription Factor Family AT3G61150 62.156 0.0 1018
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip04g02690 START 4.6e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02690 K09338 - gmx:100783614 1217.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02690 04 116039467 116046852 Aip04g02690 04 116039467 116046852 ECH
Aip02g00677 02 9986417 9996119 Aip04g02690 04 116039467 116046852 ECH