Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02659 ATGAAGAGAAAGTTATTTAGTCATATCAATCCTCACATCACGTCCTCTCTAAATGAGATATTTAAGGTTTCATCTCATCGTTCAGCTGAAGTTGAGAACTCCAAAGAGGCAAATCTGAAGGTGAATCAAAAGAAACTGGAGCGACGTGAAGAAATTGCCAAGCTAGACTTTCACATGTCTACGAGTGCAAAGTATCTTCTTATTTCAGCATTTCTTGCTTCCCGAAATCCAGCTACTCTTGATGCTTCACTTTTTGATTCCAAAGGAGGTTCTGATAATCGAAAGCGAAAGAGGAATCTATTGTTCTTTTTTGTGTGTGGACCCTCTGAGAAGCTGCCTGAAAGAAAGGAAAGTTTAGAAGAGGAGTTACTAATGAAAGGACCTGGAAGTTTCCCACTGGAGAGGTTGTTAGCCATCTTTCAGTGTATTGTATCGGTCGCAGAAGATTCGTCGGTTGAGGACAAACAAAGCGGCGAACTGATGTCTGATGTTCTGTTGCAGCTATCCAGTCTCTGCAATGCTAAATTTATGTTTAAAGGAAGAAGCTGTCCAATTGAAGGCTCAGTTCGGTATCGGTCAACTGTATCAGAAGACTTGGCTTTGAAGGTTGCAAGGAGCCTCAAGTTCCCTTTATCAATACCATTGGTGTTTAGCATTTCAATACCATTGCTGTTTCTTCAATCTAAGCTCGTGGAGGTGCTGCTGAATTATTCACCATTCTACACTTTGGCAAGATTATGCAGCCGTATATCTGGCTTCAGACACCAGATGGTGCAATACAACAAGTGGAACAGGAAATTGCAATGTTTTGCCCTTTTTTTGTCAAGAAGTAATAAAAAAGGCACGGGATCTTCAAAGAACTGTGCAATATGTCTTCCTCAACGGGATTATTGCCGATTTCATCAATTACCAGGTCGCTCAAACAAGGAGCGGAAATCTTATGATGAGAAATTCATGCGGATGGACACGAAGCAGTTATGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTGAAAACATTGGTTGATCTTATAAGCCGTACACTTGCTCGAATAATTGAAGGAAAATCCCCTGAGGAAATACACGGCATATTTAATTTGCCAGATGATCTTACAGAGGAAAAGAAATTGGAGCCCTATAAAAACACAACTGCTGATCCGAGGATCAGGCTTTTGAACCGCTTGTATGCTAAGAAAAGGAAAGAGCTGAAGGAGCATGAGAGGCTAAAGAATGTTGAAGTTGAAGAAGAGAATGTGGATGATCGTTCAGTCGATGACCTTTTGTCTTTTATTAATGGAAATGATGCAGATCCAAAGGAGATGAAAAATTCTAAGAATAAAAAGAAAAACGGAAGAAGAAAAGAGCAACAGACGAGCTCTTCTTTAAAGGAAGCTTCTGAACTGAACAATAAGGAGATAAATGGTCATAATATCAGACCCCAAACTGATGGAGCTAATGGAGTTTCCGAGGCCTCACAGTCTAATACAGAAGACAGCACTTTTGTTCCTAGAGAGTTTGATGATGGAGATATAGATGAGGAGATCGATCCTGCATTACAGGAAAAACTTGACAGGTGGGGCTAG 1584 0.4066 MKRKLFSHINPHITSSLNEIFKVSSHRSAEVENSKEANLKVNQKKLERREEIAKLDFHMSTSAKYLLISAFLASRNPATLDASLFDSKGGSDNRKRKRNLLFFFVCGPSEKLPERKESLEEELLMKGPGSFPLERLLAIFQCIVSVAEDSSVEDKQSGELMSDVLLQLSSLCNAKFMFKGRSCPIEGSVRYRSTVSEDLALKVARSLKFPLSIPLVFSISIPLLFLQSKLVEVLLNYSPFYTLARLCSRISGFRHQMVQYNKWNRKLQCFALFLSRSNKKGTGSSKNCAICLPQRDYCRFHQLPGRSNKERKSYDEKFMRMDTKQLCELTSAADSLQLKTLVDLISRTLARIIEGKSPEEIHGIFNLPDDLTEEKKLEPYKNTTADPRIRLLNRLYAKKRKELKEHERLKNVEVEEENVDDRSVDDLLSFINGNDADPKEMKNSKNKKKNGRRKEQQTSSSLKEASELNNKEINGHNIRPQTDGANGVSEASQSNTEDSTFVPREFDDGDIDEEIDPALQEKLDRWG 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02659 527 PANTHER SKP1 276 489 IPR016897 GO:0006511
Aip04g02659 527 MobiDBLite consensus disorder prediction 429 527 - -
Aip04g02659 527 MobiDBLite consensus disorder prediction 461 500 - -
Aip04g02659 527 PANTHER SKP1-LIKE PROTEIN 20 276 489 - -
Aip04g02659 527 SUPERFAMILY Skp1 dimerisation domain-like 312 381 IPR036296 GO:0006511
Aip04g02659 527 Gene3D Potassium Channel Kv1.1; Chain A 289 385 IPR011333 -
Aip04g02659 527 Pfam Skp1 family, dimerisation domain 339 375 IPR016072 GO:0006511
Aip04g02659 527 Pfam Origin recognition complex (ORC) subunit 5 C-terminus 3 212 IPR020796 GO:0000808|GO:0005634|GO:0006260
Aip04g02659 527 Coils Coil 389 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02659 Aip-Chr4 115554810 115559739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02659 1 212 Core DNA Replication Machinery Family AT4G29910 60.090 1.57e-73 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02659 - - gmx:100794666 346.28