LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip04g02648	ATGCGGCTTGAAGGAGACGCAGAACTGGAGCAGATTAGACGGCGGCACTGGATTGAACTGAACCGAGGCTATGGTTTTGGAGAAGAGCTTTCTGAAGTGACAAAGGGGGGTGCTATCACAAAGAGGATGACAGCCATTGAAGAAATGGCAGGCATGGATGTTCTTTGTAGTGACAAGACTGGGACTTTAACACTAAATAAGCTTACGGTCGACAAAAATCTTGTCGAGGTTTTCGCAAAAGGAGTGGACCCGGATACTGTTGTTTTGATGGCAGCTCGAGCTTCAAGACTTGAGAATCAAGACGCCATAGATACTGCCATTGTTGGGATGCTGGCTGATCCAAAGGAGGCACGTGCTGGTATACAAGAAGTGCATTTTCTTCCTTTCAATCCAACTGATAAGAGGACTACATTGACCTATATTGATCAAGATGGTAAAATGTATAGAGTAAGCAAAGGTGCACCCGAACAGATCCTACACTTTGCCCACAACAAATCAGACATCAAACGCAGAGTTCATGCAGTGATTGATAAGTTCGCAGAGCGCGGTCTGCGATCTCTTGCTGTAGCATACCAGGAAGTTTCCGATGGAAGGAAAGAAAGTGCTGGAGGCCCATGGCAGTTTATTGGCCTTATTCCCCTCTTTGACCCACCTAGGCATGATAGTGCCGAAACAATACGGAGGGCACTAAATCTCAGAGACAAGGATGAATTCATTGCTGACTTGCCTATTGATGAACTAATCGAAAAAGCAGATGGATTTGTTGGTGTATTTCCTGAACACAAGTATGAGATTGTGAAGCGTTTGCAAGTGAGGAAACATATATGTGGAATGACTGGTGATGGAGTGAATGATGCACCTGCTCTAAAGAAGGCAGACATTGGTATAGCTGTCGCCAATGCCACGGATGCTGCTCGTAGTGCATCTGATATTGTTTTAACAGAACCTGGTCTTAGTGTTATCATAAGTGCTTGCTAG	978	0.4499	MRLEGDAELEQIRRRHWIELNRGYGFGEELSEVTKGGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDPDTVVLMAARASRLENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTTLTYIDQDGKMYRVSKGAPEQILHFAHNKSDIKRRVHAVIDKFAERGLRSLAVAYQEVSDGRKESAGGPWQFIGLIPLFDPPRHDSAETIRRALNLRDKDEFIADLPIDELIEKADGFVGVFPEHKYEIVKRLQVRKHICGMTGDGVNDAPALKKADIGIAVANATDAARSASDIVLTEPGLSVIISAC	325

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip04g02648	325	ProSitePatterns	E1-E2 ATPases phosphorylation site.	58	64	IPR018303	-
	Aip04g02648	325	Gene3D	-	234	316	IPR023214	-
	Aip04g02648	325	SUPERFAMILY	HAD-like	52	324	IPR036412	-
	Aip04g02648	325	Pfam	haloacid dehalogenase-like hydrolase	52	293	-	-
	Aip04g02648	325	Gene3D	-	53	232	IPR023214	-
	Aip04g02648	325	TIGRFAM	ATPase_P-type: HAD ATPase, P-type, family IC	254	323	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Aip04g02648	325	Gene3D	-	68	215	IPR023299	GO:0000166
	Aip04g02648	325	PANTHER	PLASMA MEMBRANE ATPASE	233	324	-	-
	Aip04g02648	325	PANTHER	PLASMA MEMBRANE ATPASE	33	232	-	-
	Aip04g02648	325	Gene3D	-	33	52	-	-
	Aip04g02648	325	PRINTS	P-type cation-transporting ATPase superfamily signature	302	314	-	-
	Aip04g02648	325	PRINTS	P-type cation-transporting ATPase superfamily signature	210	221	-	-
	Aip04g02648	325	PRINTS	P-type cation-transporting ATPase superfamily signature	56	70	-	-
	Aip04g02648	325	PRINTS	P-type cation-transporting ATPase superfamily signature	279	298	-	-
	Aip04g02648	325	PANTHER	CALCIUM-TRANSPORTING ATPASE	233	324	-	-
	Aip04g02648	325	PANTHER	CALCIUM-TRANSPORTING ATPASE	33	232	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip04g02648	Aip-Chr4	115356974	115358967	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip04g02648	33	325	Primary Pumps ATPases	AT3G47950	78.419	5.82e-178	516

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip04g02648	K01535		-	gmx:100819324	515.768