Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02611 ATGGCCAGAAGATATAAGGGACATGCCGTGGGAATCGACCTTGGTACGACTTACTCGTGTGTTGCTGTGTGGAAAGACCAGCAAAGCCGAGTGGAGATCATTCATAATGACCAGGGAAATAGAACAACTCCTTCTTGTGTTGCTTTCACAGATCAGCAGAGGTTGATTGGTGATGCTGCTAAGTACCAGGCTGCTTTTAATCCAACCAACACTGTCTTTGGTCAGAAGAAACGTTTTTCTCCGGAAGAAATCTCAGCTATGGTTCTCACAAAGATGCGTGAGATTGCAGAGGCATATCTGGAGTCACATGTAAATAATGCTGTGATTACTGTGCCTGCTTATTTCAATGACTCTCAGCGCAAAGCTACCAAAGATGCTGGTGCCATTGCAGGCCTCAATGTGTTGCGCATAATCAATGAACCCACGGCTGCAGCTATTGCATATGGCCTTGACAAGAGAGCTGATTGTGCTAGAAAGAGAAACATTTTCATCTTTGATCTTGGTGGTGGTACTTTCGATGCGTCTCTTCTTACTATTAAAGATAAGGTGTTTGAAGTTAAGGCCACTGCCGGAAACACACACCTTGGTGGAGAAGACTTTGATAACAGAATGGTTAACCACTTTGTGGAGGAGTTCAAAAGAAAGAACAAAGTGGATATTAGTGGAAACCCAAGAGCATTAAGAAGATTGAGAAGTGCATGTGAGAGGGCAAAAAGGGTACTGTCATTCGCAGTTGATACCATTGTTGAAGTAGATGCTTTATCCCAAGGCATTGACTTGTGCTCTTCAATCACTCGAGCTACCTCTAAAGAGTGTATGAAAGCAGTTGATAGGTGTCTTACAGATGCTAAGATAGAGAAGAATTCTATACATGATGTTGTCCTCGTTGGGGGATCTTCTAGGATTCCCAAAGTGCAGGAGTTATTGCAGAAGTTTTTCAACAGGAAAGATCTTTACAATAGCATTAGTCCTGATGAAGCTGTAGCTTATGGTGCAGCAGTTCAGGCTGCACTATTGAGTGAAGGCATGAAGAATGTTCCAGACATGGTGCTACGTGATGTTACACCATTGTCACTTGAAGACAGAAAATATGTCACAATCGATGATAACCAATACTCTGTACTTCAACAAGTTTACGAGGGTGAGAGGATGAAAGCCAGTGATAACAACTTGCTGGGCCAGTTCACACTTTCTGGTATTCCTCCTGCTCCTCGAGGCCATCCTATTATGGTAAGCTTTGATATAGATTTTAATGGTATCCTCTGTGTATCTGCTAAGGAAAATACCACTGGCAATAAGAACCAGATTACCATAACCGACGACAAAGGAAGATTGTCAAGTGAAGAAATCGCAAGACTGGTTAGGGAAGCTGAGAAATACAAGGCTGAAGATATGAAGTTTCTTGAAAAGGCTAAAGCTATAAATGCTTTGGATGATTACGTTTACAAAATGGAGAAAGCTTTAAAGGATAAGGGCATTAGTAATAAGCTTTCCCAATATGACAAGAACAATATTAGTAATGCAATCACAAAGGCTAGAAAATTTCTTGATGGTGACCAAAAGCAGGAGGAAATAAATGTGATCAAGGTTATGCTAAATGAGGTCAAACGCATCTTTGATCCCATTATGATCATGATTGGCTAG 1644 0.4136 MARRYKGHAVGIDLGTTYSCVAVWKDQQSRVEIIHNDQGNRTTPSCVAFTDQQRLIGDAAKYQAAFNPTNTVFGQKKRFSPEEISAMVLTKMREIAEAYLESHVNNAVITVPAYFNDSQRKATKDAGAIAGLNVLRIINEPTAAAIAYGLDKRADCARKRNIFIFDLGGGTFDASLLTIKDKVFEVKATAGNTHLGGEDFDNRMVNHFVEEFKRKNKVDISGNPRALRRLRSACERAKRVLSFAVDTIVEVDALSQGIDLCSSITRATSKECMKAVDRCLTDAKIEKNSIHDVVLVGGSSRIPKVQELLQKFFNRKDLYNSISPDEAVAYGAAVQAALLSEGMKNVPDMVLRDVTPLSLEDRKYVTIDDNQYSVLQQVYEGERMKASDNNLLGQFTLSGIPPAPRGHPIMVSFDIDFNGILCVSAKENTTGNKNQITITDDKGRLSSEEIARLVREAEKYKAEDMKFLEKAKAINALDDYVYKMEKALKDKGISNKLSQYDKNNISNAITKARKFLDGDQKQEEINVIKVMLNEVKRIFDPIMIMIG 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02611 547 Gene3D - 153 319 - -
Aip04g02611 547 SUPERFAMILY Actin-like ATPase domain 8 152 IPR043129 -
Aip04g02611 547 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 345 478 IPR029047 -
Aip04g02611 547 Gene3D Actin; Chain A, domain 4 197 271 - -
Aip04g02611 547 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Aip04g02611 547 ProSitePatterns Heat shock hsp70 proteins family signature 2. 164 177 IPR018181 -
Aip04g02611 547 PRINTS 70kDa heat shock protein signature 107 127 - -
Aip04g02611 547 PRINTS 70kDa heat shock protein signature 170 180 - -
Aip04g02611 547 PRINTS 70kDa heat shock protein signature 322 342 - -
Aip04g02611 547 PRINTS 70kDa heat shock protein signature 348 367 - -
Aip04g02611 547 PRINTS 70kDa heat shock protein signature 8 21 - -
Aip04g02611 547 PRINTS 70kDa heat shock protein signature 406 422 - -
Aip04g02611 547 PRINTS 70kDa heat shock protein signature 290 306 - -
Aip04g02611 547 Gene3D - 475 546 IPR029048 -
Aip04g02611 547 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 341 474 IPR029047 -
Aip04g02611 547 SUPERFAMILY Actin-like ATPase domain 159 340 IPR043129 -
Aip04g02611 547 ProSitePatterns Heat shock hsp70 proteins family signature 3. 293 307 IPR018181 -
Aip04g02611 547 Gene3D - 2 75 - -
Aip04g02611 547 Gene3D - 88 337 - -
Aip04g02611 547 PANTHER HEAT SHOCK PROTEIN 70KDA 74 543 IPR013126 GO:0005524|GO:0140662
Aip04g02611 547 PANTHER HEAT SHOCK 70 KDA PROTEIN 74 543 - -
Aip04g02611 547 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 77 - -
Aip04g02611 547 Gene3D - 76 87 - -
Aip04g02611 547 PANTHER HEAT SHOCK PROTEIN 70KDA 4 77 IPR013126 GO:0005524|GO:0140662
Aip04g02611 547 Pfam Hsp70 protein 363 535 IPR013126 GO:0005524|GO:0140662
Aip04g02611 547 Pfam Hsp70 protein 76 359 IPR013126 GO:0005524|GO:0140662
Aip04g02611 547 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 473 544 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02611 Aip-Chr4 114425870 114427805 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02611 1 543 Calmodulin-binding Proteins AT3G12580 58.929 0.0 689