Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02596 ATGAGCTTCCTTCAGGGGATCATCGATTCCTTTAACTCCGTCTTCTCTTCTGATCCTTCTTCTTCTTCTTCCTCTTCTCAATCTCACCTTAATTCGACGTCAATGGAAGCTGCTTCTTCTCCTTCTTCGGTTTCGAACGAGCGCGTGGCTTTCAAGCTCAAAGGTTACTACGATTTGGCGACGCAGGAGATCGCAAAGGCCGTTCGGGCCGAAGAGTGGGGTTTGGTCGACGACGCTATTCTTCACTACAAGAACGCTCAGAGGATCCTCCTTGAAGCCCATTCTACCCCTGTCCCTTCCTTCATCACTTCCAGTGAACAAGCAAAGGTGCAATCTTATCGTCAGAAGATATCGAAATGGCAGGGCCAAGTCTCTGAGAGATTACAGGCTCTAAGTAGACGAGCAGGTTTTTACATGTCGTTTTCTTATCCCAAAAATTGTGCGCAGAGCACCTCAAACATTGCACAAACTGCTGCAGTTCCACTTAAGCCATCAAATGGTAGAAAAAATGTGGTACACAGGTATTCTCAACCAAGAGGGCAGGTGAATAAAGTTGGAAGCTCAAATTCTAGTCAAGCTGGTGTAAATTATGATACAAAATTGGTTGAAATGATTAACACTGCAATAGTAGACAGAAGTCCTTCTGTTAGATGGGATGATGTCGCTGGGCTTGAGAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGGAGAGACTTATTCACTGGTCTTCGAAGGCCAGCCAGAGGTTTGCTACTCTTCGGTCCACCTGGTAATGGAAAGACCATGCTTGCCAAAGCTGTAGCTTCAGAATCAGATGCAACATTTTTCAATGTGTCTTCCGCATCATTGACATCTAAATGGATTGTTGCATACTTTGTGCTAATATCCCCCCCACTTCAAACAATATTGACTTTCTACCTCTTCTTCTCCTTCTGGTTACAGATTGATAGTATAATGTCAACAAGAACGGAAAATGAGAATGATGCGAGCAGACGGTTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATAGTAATGATATTGTGATTGTAATTGGTGCAACCAACAAGCCACAGGAATTGGATGATGCAGTTCTTAGGAGGCTGGTAAAGAGAATCTATGTGCCTTTACCTGATGAAAATGTTCGGAGACTTCTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCATTACCGAACAGAGATCTGGAAAAACTTGTCAAAGAGACAGAAGGTTATTCTGGAAGTGATCTTCAAGCATTGTGTGAAGAGGCTGCAATGATGCCAATTAGAGAGCTGGGATCTAACATTCTTACTGTTAATGCAAATCAGGTAAGAGGATTAACTTACAATGATTTCAAGATGGCAATGACGGTCATCAGACCAAGCTTAAAGAAAAGCAAGTGGGAAGAGTTGGAACGCTGGAATGAGGAGTTTGGCTCTAATTGA 1473 0.4284 MSFLQGIIDSFNSVFSSDPSSSSSSSQSHLNSTSMEAASSPSSVSNERVAFKLKGYYDLATQEIAKAVRAEEWGLVDDAILHYKNAQRILLEAHSTPVPSFITSSEQAKVQSYRQKISKWQGQVSERLQALSRRAGFYMSFSYPKNCAQSTSNIAQTAAVPLKPSNGRKNVVHRYSQPRGQVNKVGSSNSSQAGVNYDTKLVEMINTAIVDRSPSVRWDDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESDATFFNVSSASLTSKWIVAYFVLISPPLQTILTFYLFFSFWLQIDSIMSTRTENENDASRRLKSEFLIQFDGVTSNSNDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPNRDLEKLVKETEGYSGSDLQALCEEAAMMPIRELGSNILTVNANQVRGLTYNDFKMAMTVIRPSLKKSKWEELERWNEEFGSN 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02596 490 CDD MIT_spastin 53 131 - -
Aip04g02596 490 MobiDBLite consensus disorder prediction 15 40 - -
Aip04g02596 490 CDD AAA 240 385 - -
Aip04g02596 490 ProSitePatterns AAA-protein family signature. 357 376 IPR003960 GO:0005524|GO:0016887
Aip04g02596 490 Gene3D - 214 484 IPR027417 -
Aip04g02596 490 PANTHER AAA DOMAIN-CONTAINING 4 490 - -
Aip04g02596 490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 487 IPR027417 -
Aip04g02596 490 Pfam AAA+ lid domain 410 441 IPR041569 -
Aip04g02596 490 Gene3D - 386 468 - -
Aip04g02596 490 SMART smart 53 130 IPR007330 -
Aip04g02596 490 Pfam ATPase family associated with various cellular activities (AAA) 255 385 IPR003959 GO:0005524|GO:0016887
Aip04g02596 490 Gene3D - 46 135 - -
Aip04g02596 490 PANTHER BNAC04G50250D PROTEIN 4 490 - -
Aip04g02596 490 SMART AAA_5 251 387 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02596 Aip-Chr4 114269236 114273675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02596 196 471 Calmodulin-binding Proteins AT3G56690 32.979 1.79e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02596 K13254 - gmx:100780946 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02596 04 114269236 114273675 Aip04g02596 04 114269236 114273675 ECH