Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02576 ATGCAAACAGGTATATCAGCTGGTGTTGGCGTTATTGTAATGATCTTTGTTGCAATTTCTTATTATTGCAAGAGGCATTTCAGTAGGATAATGCTGAACAAAGAAACATCTCTTGTTCGACAATTTGGGGAGCAAATAAATAATGCAACACTAGTGAGATATACTTATGCAGAAGTAGAACAGATGACAAACTCATTTCAAGAAGAGTTAGGAAAAGGAGGATTTGGTATTGTATACAAAGGAAGTTTAAATGATGGTTGTCAACTGGCAGTGAAGATACTTAAGGAGATGAAAGGAAGTGTAGAAGAATTTGTAAACGAGGTTGTTACTATCAGTAGAACATCTCATGTGAACATTGTTTCACTTTTGGAATTTTGCTATGAAATGAATAAACAGGCTCTTATTTATGAATTCATGTCTAAGGGCTCTTTGGATAAATATAAATGTAAAGAGGGATCTTCCGAGTTAGATTGGAAAACACTACTTCAGATTGTAACTGGCGTTGCTCAAGGGTTAGACTACTTACATCGAGGGTGCAATACAAGAATTTTGCATTTTGATATCAAACCCCAAAATATGCTTCTTGATGAAAAATTTTGTCCAAAAATTGCTGATTTTGGACTAGCTAGAATATGCAAAAAGGATGAAAGTGTTGTGTCTATATTAGACAGAAGAGGGATTCCGGGTTATATTTCACCAGAAATGTTTAGTCGAAGGAATGGTAGAGTTTCTCACAAGTCAGATGTATATAGTTATGGAATGCTAATTCTTGAAATGATTGGAGGAAACGATAATTATGATATTGGAGAATCTCATAGTACTGAATACTTTTCTGATTGGATTTTGAAGGATATCAAAGAAGATAAAATTCGTCTATTGAGATTTGCTTCTGGAAAAGATGATGAAGATATAATAAAAAAGATTTTATTTGTCGGTTTATGGTGCATCCAAATGAATCCATCAGATAGACCAAAAATGTGTAAAGTGGTGGAAATGTTACAAGGAAAACTTGAATCAATATCACTAGAGTCCATCATATCTTCTCCGACAGTACCTCTCTTACAGCATTCAGATGCATCTCATAGCTGA 1089 0.3416 MQTGISAGVGVIVMIFVAISYYCKRHFSRIMLNKETSLVRQFGEQINNATLVRYTYAEVEQMTNSFQEELGKGGFGIVYKGSLNDGCQLAVKILKEMKGSVEEFVNEVVTISRTSHVNIVSLLEFCYEMNKQALIYEFMSKGSLDKYKCKEGSSELDWKTLLQIVTGVAQGLDYLHRGCNTRILHFDIKPQNMLLDEKFCPKIADFGLARICKKDESVVSILDRRGIPGYISPEMFSRRNGRVSHKSDVYSYGMLILEMIGGNDNYDIGESHSTEYFSDWILKDIKEDKIRLLRFASGKDDEDIIKKILFVGLWCIQMNPSDRPKMCKVVEMLQGKLESISLESIISSPTVPLLQHSDASHS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02576 362 PANTHER TYROSINE KINASE FAMILY PROTEIN 7 361 - -
Aip04g02576 362 SMART serkin_6 64 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02576 362 ProSitePatterns Protein kinases ATP-binding region signature. 70 92 IPR017441 GO:0005524
Aip04g02576 362 ProSiteProfiles Protein kinase domain profile. 64 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02576 362 Gene3D Phosphorylase Kinase; domain 1 27 138 - -
Aip04g02576 362 SUPERFAMILY Protein kinase-like (PK-like) 46 333 IPR011009 -
Aip04g02576 362 Pfam Protein tyrosine and serine/threonine kinase 66 333 IPR001245 GO:0004672|GO:0006468
Aip04g02576 362 Gene3D Transferase(Phosphotransferase) domain 1 139 346 - -
Aip04g02576 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Aip04g02576 362 PANTHER RUST RESISTANCE KINASE LR10-RELATED 7 361 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02576 Aip-Chr4 113630091 113631179 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02576 49 362 Receptor kinase-like Gene Family AT5G38280 54.630 1.44e-117 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Aip04g02576 PK_Tyr_Ser-Thr 2.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02576 - - aip:107636243 709.523