Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02557 ATGAGTGCAAGCACAAGCCGCCGCGGCGGCGGCGGTAGCAGCGGCGCTAGTGGGAGTGGTACCAAGGGTAGGGGTAGTGGCGGTCCTTGCGGCGCTTGCAAGTTTCTGAGGAGGAAATGTGCTCCGGGATGCGTCTTTGCGCCCTACTTTGATCCTGATCAAGGTGCAACCTACTTTGCATCGGTGCACAAGGTTTTTGGGGCTAGCAACGTTGGTAAGCTTCTTTCCAAAATTCCAGCTCATAAGAGGCTTGATGCAGTTATTACTATTTGTTATGAAGCACAAGCACGAATGAAAGATCCTGTTTATGGATGTGTTGGTCAAATCTGTACCCTTCAACAACAGGTGTTAGCTTTACAAGCCGAACTCTCATTCTTACAAAATCATCTTACTACAATGGAGATACGCCAACCGCTACCAATTCCTCCAACGCAAGGAGTGCCGACATCAACTGTTTTCTCAGTTGCGGACTTACCAACGGTTGTGGGTGTTGCCCCCGCCACCTTATCAATGCCGGCCACCTTTGATCTGTCTTCCCACTTTGATCCAGCAACGGCCCAAGCATCTTGGGCTGTGTATCAACGGGCCATGATGGACCCACGCCAATACATGGCTGTTGCCAGCCCAATAGGCCCAACTGCTGGTGGTGGTGTTGATCTCCAAACAGTTGCACGTGAGCTCATCAATAGGCATGTGCCTCCGCAAGCACCACCTCAGGCTTTTGGTTCCAATGCTGCATCGACGTCAGCTCCATCGCTTAGTTCTTCTAAGTGA 774 0.5129 MSASTSRRGGGGSSGASGSGTKGRGSGGPCGACKFLRRKCAPGCVFAPYFDPDQGATYFASVHKVFGASNVGKLLSKIPAHKRLDAVITICYEAQARMKDPVYGCVGQICTLQQQVLALQAELSFLQNHLTTMEIRQPLPIPPTQGVPTSTVFSVADLPTVVGVAPATLSMPATFDLSSHFDPATAQASWAVYQRAMMDPRQYMAVASPIGPTAGGGVDLQTVARELINRHVPPQAPPQAFGSNAASTSAPSLSSSK 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02557 257 ProSiteProfiles LOB domain profile. 28 130 IPR004883 -
Aip04g02557 257 MobiDBLite consensus disorder prediction 232 257 - -
Aip04g02557 257 MobiDBLite consensus disorder prediction 1 26 - -
Aip04g02557 257 MobiDBLite consensus disorder prediction 1 21 - -
Aip04g02557 257 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 1 232 - -
Aip04g02557 257 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 232 - -
Aip04g02557 257 MobiDBLite consensus disorder prediction 240 257 - -
Aip04g02557 257 Pfam Lateral organ boundaries (LOB) domain 29 127 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02557 Aip-Chr4 112899386 112916759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02557 32 257 AS2 family AT2G45420 50.000 8.40e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip04g02557 LOB 7.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02557 K21994 - twl:119982189 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02557 04 112899386 112916759 Aip04g02557 04 112899386 112916759 ECH
Aip04g02557 04 112899386 112916759 Aip02g02668 02 102117628 102122810 PCT