Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02554 ATGGAGGCAAGAGAAGCTATTAGCTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCCTCGGCATACCATGTGGCACCAAGGAGTGAAGCTCCGAGCCAAGTTCCTGGCCCGGATGCAGCTGCTAATGCTGCTCTTGGTATTTCGCCGGTGAGTGTAGGATTGGATGGAACAACAATTAAGAAAAAACGTGGTAGGCCAAGGAAGTATGGACCGGATGGATCGGTTAATATGGCATTGTCACCATTGCCAATTTCTTCTTCGGCTCCGTCTTCTAACGAATTTTCGAGCTTCCATTCAAGTGGCAAGCGAGGGAAATCGCGGGGTATGGAGTACAAGCACTCAAAGAAATTCGGAGGAGGGGATATTCTAGGAGATTCCATGGGTACAAGCTTTATGCCCCATATCATTACTGTCAATGCTGGCGAGGACATCACAATGAAGGTTATATCGTTTTCTCAACAAGGACCACGAGCTATATGCATACTATCTGCTACTGGTGTAATTTCAAATGTTACGCTTCGCCAGCCTGATTCTTCAGGAGGAACTTTGACCTATGAGGGTCGTTTCGAGATACTTTCCTTGACTGGATCATTTATGCCTACTGACAACGAAGGAACGAGAAGCCGGTCAGGTGGGATGAGTGTCACCTTGTCCAGCCCTGATGGCCGTGTCTTAGGCGGTGGCGTTGCTGGTCTTCTTGTAGCTGCCAGTCCTGTGCAGGTGGTTGTTGGAAGTTTTCTGCCAAGCAACCAGCAAGATCCGAAACCAAAGAAGCAGAAGCATGATTACGCACCACCAGCAGCAGTTAACCCGGCCATTGCAGTGTCCTCTGCGCTGCCACCCTCAACTAACGGCGATAAAGAGGATGTCATGGGTGGGCACGTGATGCAACACAATCCCGGAACCTTCAACTCTAGCCTCACTCCTCCCTCTGCCTTCCGAAGGGACAGCTGGGTTAACATGCATTCCATGCCAGACTCGATTAAATCCACCACGGATATTAACATCTCTTTGCCTGATGATTGA 1026 0.4961 MEAREAISSGVTVIGAEAPSAYHVAPRSEAPSQVPGPDAAANAALGISPVSVGLDGTTIKKKRGRPRKYGPDGSVNMALSPLPISSSAPSSNEFSSFHSSGKRGKSRGMEYKHSKKFGGGDILGDSMGTSFMPHIITVNAGEDITMKVISFSQQGPRAICILSATGVISNVTLRQPDSSGGTLTYEGRFEILSLTGSFMPTDNEGTRSRSGGMSVTLSSPDGRVLGGGVAGLLVAASPVQVVVGSFLPSNQQDPKPKKQKHDYAPPAAVNPAIAVSSALPPSTNGDKEDVMGGHVMQHNPGTFNSSLTPPSAFRRDSWVNMHSMPDSIKSTTDINISLPDD 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02554 341 MobiDBLite consensus disorder prediction 55 110 - -
Aip04g02554 341 CDD DUF296 133 246 IPR005175 -
Aip04g02554 341 MobiDBLite consensus disorder prediction 79 102 - -
Aip04g02554 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 340 IPR039605 GO:0003680
Aip04g02554 341 Gene3D - 133 262 - -
Aip04g02554 341 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 340 - -
Aip04g02554 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 130 249 - -
Aip04g02554 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 133 246 IPR005175 -
Aip04g02554 341 ProSiteProfiles PPC domain profile profile. 128 267 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02554 Aip-Chr4 112746331 112750072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02554 10 269 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 56.655 4.79e-95 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02554 - - gmx:100777213 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02554 04 112746331 112750072 Aip04g02554 04 112746331 112750072 ECH
Aip04g02554 04 112746331 112750072 Aip02g02663 02 102023057 102027661 PCT