Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02542 ATGGCTGCTTGTGCTTTGTTCAGTGGTGCCAGTAACAACACTGCCGAAGATGGGAATGTCAGCACCACCACCACCACCACCAACGGTGCTGCTGTTGCCGGAAGTGGTAGTAGCCCTCTCACCAGTGCTTCCAGCAACATCAGCGCCGGTGAAGAACAACAACACATGCTTCTTCTCCATGGTAGTAGTGGCTTCATGAATCAGCCTCATTGTGAGAGGAAATTGGTGAGAAAAAGAATGGCTTCTGAGATGGAACTTCACCCTTCTATAACCAACACCACCACCACCACCATTTCTGAGTATCCTAGGTTTCCTCGTCGAACCACCAACAACATCAACACCTCCTCTTTCATTCAAAAGGGCTCCTCAGTTGGTACAGGTAGTAATTGTAACTATCCTTATAATAATAATAACAATAACAATAATATTAATAATAATAATAATAGTAATAGTATTAGTAATGTTGTTGTATCAAGAGATAACGTTACTATTCCAAATTACCCCATTGTGACGCTCACAACCAACTACTCCACTATGATGCTACCTTCTCTTTCATCATCTTCATCATCGTCATCATCATCTTCTTCCACCAATCTCATCAACACCGTCAATTCTTCCTCACCCTCAATACCCTCCACAACCATAACCGTTTCGGCTCCAAACTACGCTCAACACTTCAATCAAGAAATCCTACTTGACAACAATCAAAACACAACATCACCTGCGGTTGTTACTTCTTCGCCTTCTTCCATGGATGAAAGCTCAGCCGCTTCTAATTGGATCGATGGAATATTGAAGGATCTAATTCACAGCTCTAATAGTGTCTCAATCCCTCAGCTCATCAACAACGTCAGGGAGATTATATACCCTTGCAACCCAAACTTGGCCATGCTTCTTGAGTACAGGCTCCGCCTCCTCACTTCTGACTCCTCCGCCTCCGCCGTGCCCGCAGCACCACCGCCACCACCGCCTCCACAAAACAAAACTCCGGTTATGAAGCAAACAAATACTTCAAACATGCATGCTTACAGCACTATGCATTTTCAAGATTCATCTTTGAATCAGTACTGGCCTGTAGTACCGCCAACGCCGTTAGATTCTAACAACAACAATTCAGTTTCGTTGGCCAATACTTTACCATCACCGCCACCGCCTCCGCCGCCGCCACAGCCACCGCAACAAGAGAAACCCGAAGAAGATCTTGTTACAGCACCGGCAACCACCACGAGCACCGCCACCGCCACAGAAATGGCGGTGCTAACGAGAAAGAAAACGGAGGAGATGAATCAACAGAAGAAGAAAGACGAAGAAGGCTTGCACCTCCTCACACTACTCCTCCAGTGCGCAGAAGCAGTTTCAGCGGAGAATCTAGAAGACGCGAACAAGATGCTTCTAGAAATTTCTCAACTGTCGACGCCGTTCGGCACATCAGCGCAACGCGTGGCAGCGTATTTCTCGGAAGCCATATCCGCAAGGCTGGTCAGCTCTTGCCTCGGAATCTACGCAACGCTGCCAATCGTTCCTCACAGCCAGAAAGTGGCCTCCGCTTTCCAAGTCTTCAACGGAATCAGCCCCTTCGTCAAGTTCTCCCACTTCACCGCCAACCAAGCCATTCAAGAAGCGTTCGAGAGAGAAGAAAGGGTTCACATCATAGATCTAGATATAATGCAAGGCCTCCAGTGGCCTGGCCTCTTCCATATTCTGGCTTCCAGGCCCGGTGGGCCTCCTTACGTGAGGCTCACGGGCCTTGGAACTTCCATGGAAGCACTGGAGGCCACTGGAAAGCGGTTATCGGATTTCGCCAATAAGCTTGGCCTTCCGTTTGAATTCTTTGGCGTTGCGGAGAAAGTTGGGAACGTTGATCCTGAGAGGCTTAATGTTAGTAAGGCTGAGGCTGTTGCTGTTCATTGGTTGCAGCATTCTCTTTATGATGTTACTGGTTCGGACACAAACACTTTGTGGCTTTTGCAGAGGTTGGCACCTAAGGTGATAACAGTGGTAGAGCAAGACCTAAGCAACACAGGTTCATTCTTGGGAAGGTTTGTGGAAGCCATACACTACTACTCAGCATTATTTGACTCCCTTGGTTCAAGCTATGGAGAAGAGAGTGAGGAGAGACATGTGGTGGAGCAGCAACTACTCTCAAGGGAGATTCGGAATGTTCTAGCTGTTGGGGGTCCATCAAGGACTGGTGAACCAAAGTTTCATAACTGGAGGGAGAAGCTTCAACAATGTGGATTTAGAGGTATATCACTAGCTGGTAATGCTGCTACACAAGCAAGTTTGTTACTTGGTATGTTCCCTTCTGAAGGGTACACTTTGGTGGAGGACAATGGTATTCTTAAACTTGGTTGGAAGGATCTTTGTTTGCTCACTGCTTCAGCTTGGAGACCACCCTATACCACTGCAATGGCTCATCATCATAGTTAA 2430 0.4724 MAACALFSGASNNTAEDGNVSTTTTTTNGAAVAGSGSSPLTSASSNISAGEEQQHMLLLHGSSGFMNQPHCERKLVRKRMASEMELHPSITNTTTTTISEYPRFPRRTTNNINTSSFIQKGSSVGTGSNCNYPYNNNNNNNNINNNNNSNSISNVVVSRDNVTIPNYPIVTLTTNYSTMMLPSLSSSSSSSSSSSSTNLINTVNSSSPSIPSTTITVSAPNYAQHFNQEILLDNNQNTTSPAVVTSSPSSMDESSAASNWIDGILKDLIHSSNSVSIPQLINNVREIIYPCNPNLAMLLEYRLRLLTSDSSASAVPAAPPPPPPPQNKTPVMKQTNTSNMHAYSTMHFQDSSLNQYWPVVPPTPLDSNNNNSVSLANTLPSPPPPPPPPQPPQQEKPEEDLVTAPATTTSTATATEMAVLTRKKTEEMNQQKKKDEEGLHLLTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPIVPHSQKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFANKLGLPFEFFGVAEKVGNVDPERLNVSKAEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVITVVEQDLSNTGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPYTTAMAHHHS 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02542 809 Pfam GRAS domain family 442 797 IPR005202 -
Aip04g02542 809 MobiDBLite consensus disorder prediction 183 205 - -
Aip04g02542 809 MobiDBLite consensus disorder prediction 378 395 - -
Aip04g02542 809 PANTHER PROTEIN SCARECROW 184 799 - -
Aip04g02542 809 MobiDBLite consensus disorder prediction 315 329 - -
Aip04g02542 809 ProSiteProfiles GRAS family profile. 432 797 IPR005202 -
Aip04g02542 809 MobiDBLite consensus disorder prediction 359 410 - -
Aip04g02542 809 MobiDBLite consensus disorder prediction 359 377 - -
Aip04g02542 809 MobiDBLite consensus disorder prediction 312 333 - -
Aip04g02542 809 MobiDBLite consensus disorder prediction 12 48 - -
Aip04g02542 809 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 184 799 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02542 Aip-Chr4 112616342 112620202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02542 439 797 GRAS Transcription Factor Family AT5G41920 57.337 9.86e-142 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip04g02542 GRAS 4.1e-123 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02542 - - gmx:100803919 928.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02542 04 112616342 112620202 Aip04g02542 04 112616342 112620202 ECH
Aip02g02276 02 95049495 95052541 Aip04g02542 04 112616342 112620202 PCT