Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02539 ATGGGCAATTGCGGCACCAGAGAAGAATCCGCAGTAGTTTCCAATGCTCAAGTTCAGCAGCTCCAGGCGTCGTCCTTGAGCTCCAGGAACGCCGGCACCGGCGCCGGTGACAGGAAGCACAGCCGCTCGGTGTCGGATCTGAGCGAGTCTTGCTCCACGCCGCGCCACTACAACATCGAAGACGTGAGGAACAACACGCTGCTCTACACGCACGTGATCGCGTTCACGCTCTACGAGCTTGAGACAATCACCAAGAGTTTTCGCTCCGATTATATTCTCGGAGAGGGAGGGTTTGGGACTGTGTATAAGGGGTACATTGATGAGAATGTGAGGGTTGGGCTCAAGTCGCTGCCCGTAGCGGTTAAGGTTTTGAACAAGGAAGGGCTTCAGGGACACCGAGAATGGCTTACGGAAGTGAATTTTCTAGGGCAGCTTAGGCATCCTAATCTGGTGAAGTTGATAGGGTACTGCTGTGAGGATGACCACAGGCTGCTTGTGTACGAGTTCATGTTTCGAGGAAGTCTGGAAAATCACCTATTCCGAAAGGCAACTATCCCTTTACCATGGGCTACAAGAATGATGATTGCTCTAGGAGCTGCCAAAGGGCTTGCCTTTCTGCACAATGCTGAAAGGCCAGTAATCTACCGTGACTTTAAAACGTCTAATATATTATTGGACTCTGACTATACGGCCAAGCTTTCTGATTTTGGTCTAGCAAAAGCAGGACCACAAGGGGATGAAACCCATGTATCTACCCGAGTCATGGGTACATATGGTTATGCTGCCCCCGAATATGTAATGACTGGCCACTTGACAGCTAGGAGTGATGTGTATAGCTTTGGGGTTGTTCTTTTGGAGCTTTTGACGGGAAGGAAATCTGTTGACAAGACAAGACCTGGGAAGGAACAGAGCTTAGTAGATTGGGCACGGCCAAAGCTTAATGACAAGCGCAAACTCCTGCAAATAATTGATCCTAGATTGGAAAACCAATATTCAGTGAGAGCTGCACAGAAAGCATGTAGCTTGGCATACTATTGTTTGAGTCAAAATCCGAAAGCCAGACCACTAATGAGCGATGTGGTCGAGACATTGGAGCCCTTACAAAGTTCAAGTATAGGTGCCGGTGAAGTTTCATTAACCGGCTCAAATAGTGTAAGCACAGGGCACTTTCCGATGACCAAAATCTCCGACTACCGAATGCGTCCCAAGTTCTCAAACAATGTTGGTCCTGGTGCTGCTTGCCGGTCTCCTAACCCTAGCTGCTCGCCGGGTGCTGCAGCAGCATGCCGGGTAAGATAA 1299 0.4942 MGNCGTREESAVVSNAQVQQLQASSLSSRNAGTGAGDRKHSRSVSDLSESCSTPRHYNIEDVRNNTLLYTHVIAFTLYELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATIPLPWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSSIGAGEVSLTGSNSVSTGHFPMTKISDYRMRPKFSNNVGPGAACRSPNPSCSPGAAAACRVR 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02539 432 CDD STKc_IRAK 93 367 - -
Aip04g02539 432 Gene3D Transferase(Phosphotransferase) domain 1 170 377 - -
Aip04g02539 432 MobiDBLite consensus disorder prediction 22 52 - -
Aip04g02539 432 ProSitePatterns Protein kinases ATP-binding region signature. 93 122 IPR017441 GO:0005524
Aip04g02539 432 ProSiteProfiles Protein kinase domain profile. 87 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02539 432 Gene3D Phosphorylase Kinase; domain 1 48 169 - -
Aip04g02539 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Aip04g02539 432 PANTHER OS01G0588500 PROTEIN-RELATED 28 419 - -
Aip04g02539 432 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL8-RELATED 28 419 - -
Aip04g02539 432 Pfam Protein tyrosine and serine/threonine kinase 92 364 IPR001245 GO:0004672|GO:0006468
Aip04g02539 432 SUPERFAMILY Protein kinase-like (PK-like) 64 365 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02539 Aip-Chr4 112501806 112505939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02539 60 374 Glycoside Hydrolase AT3G07070 52.830 1.38e-108 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aip04g02539 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02539 - - gmx:102662348 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02539 04 112501806 112505939 Aip04g02539 04 112501806 112505939 ECH