Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02538 ATGGGTTTGAACTTCAACTCCCTCAGGCTTCTTGTCTTCATCTTTTCCCTTGTTAGCTTTATCATGAGTTTCCCAACAACTACTAAAGCAAAAGAACTTGATTACCAAGGCCCAAAGTGTTCTGAAGATAGGACCACTTTTAACAGCACCTACCAAGTAAACCTTATGACACTTTTCTCATCCCTATCTTCCAAAGCCATCATCACCATCTTCTACAACGACACCGTCATAGACAACAAAGATACTTCTAGTGCAGTGTATGGACTCTTCATGTGCAGGGGTGATGTACCCTTTGATGTTTGTGGAGACTGCGTTCAAAGCGCAAGCCATGTTCTCTCTGCAGAGTGCACCTTATCCCTATGGGGTATGATCTGGTACGAACAATGCATGGTTCGGTATTCCAACACTCGTTTCTTTTCTGTTCCAGAAACAGAGCCCTTCACTCCCATGTCCAACAACTTCAATGTTTCCATTAATCAAGACATCTTTGTCCCTCTTCTTGCCAACACAATGAACAAAACTGCAGAACAAGCCGCCGTTTCTCTCAACAAGTATGCCACAAAGGAACAAAAGGTAACAAAACTTGAGACGATTTTTACTCTTGCTCAGTGCACCCAGGACCTCTCGGTTGGAGATTGCAGATCTTGTCTTGGATTCGCCGTTGGGCAGATCCATGAATGTTGTAAAGGAAGACGAGGAGGGAGAGTATTGCTCCCCAGCTGTAATGTTCGGTTTGAATTTTACCCCTTCTATCGTCATGGCGTCTCTAAAGCACTTGCTCCTGCTACAAAGTATCCAATCATGGAGTCGAAATATTCGCCAGATCCGGGTTATTTGTCTCACCAATGTTCAAATAATCAACCCACAAACTTACAGAAACGCCTAACGACGCTCCTCTCTGACTTGTCTTCCAAGGCAACAAACTCGAACAACAACGAGTTCTACATGAGCAATGTTAGCAACAACTTGTTTGGCCTCTACTTGTGCCGCGCCGACCTACCGTCTTCTCTCTGCGCAGACTGCATAGTCAACGCCACAAACCGAATCACCTCCGAGTGTCCAACGTCCATGGAGGCTATAATCTGGTACAACCATTGCTTGCTTCGTTACTCCAACCACTCTTTCTTCAGAACAATGGGAACTAATCCAAGATTCAAGATGATGAATGTTACGGACTATGACGATTACAAAAGCTACTACAAGTACGAACTGTGGAGTGCGTTGACGAAGGTGGCGGGAGAAATCTGGGATCGGAGTGACAGATATTACGCAGAGTCCTTTGTGTTGAACGATGTGCAAAGATTGTTCGTGCAGGGGCAGTGCACGAAAGATTTGGCTACTTTGGATTGTAATTACTGTATTCACGATGTGATTGAAACGGCGATTCCGTGGTGTTGTTTGGGAAGCATAGGTGGCAGAGTTTTGTATCCAAGCTGCACTTTGAGATTTGAGTTGTTTCCATTCTATAGGAATGGTACGGACGATCAGCCTCCGTCAACTACAACTACAGTGAAAACTGGTCGATCACGAGCAGTTATCTTGATTATTGTTGTCCCCGTTGTTGCTTTGGTGTTACTCCTCTCTTTTTGTTGCTATTTGTTTCGGAAAAGAGCAAGAAAAAGTTACAATAAGACCATCCTCAGAAAAAATTTTGGCCATGAAAGTGACACTATAGGGGGCTTGCAATTCAATTTGTCTATAATTGAAGCGGCAACAAATCACTTTTCACAAGAGAACGAGATTGGCAAAGGTGGATTTGGACAAGTTTACAAGGGTGTTCTTCCTGATGGACGACATATAGCTGTAAAGAGACTTTCAAAAAGTTCTACCCAAGGTGCTACTGAATTCAAAAACGAGGTTTTATTAATAGCCAAACTTCAACATAAAAATCTAGTGGCATTTTTAGGATTTTGTCTTGAAGGACAAGAGAAGATACTTATCTATGAATATGTTCCAAACAAGAGCTTGGATTACTTTCTGTTCGATCCTCATTCCGAGAAGTTGTTAAATTGGTTTGAACGCTACAATATTATAGATGGAATTGCTCAAGGAATTCTTTATTTACATGAATATTCTCGTCTCAAAGTTATTCATCGTGATCTTAAACCTAGTAATATATTACTAGATGAAAATATGAATCCTAAAATTTCAGACTTTGGTCTTGCTCGAATCATAGATCAACAACAAGGATCTGCATCTAGAGTTGTTGGAACACTGGGTTATATGTCTCCTGAATACGCAATGCAAGGAAAATTTTTTGAAAAGTCAGATATTTTCAGTTTTGGAGTCATGATTCTCGAAATTATTACAGGAAAAAAGAATGTAGGTTCCAATGTATCATACCGTATTGCAGAGGGTCTTCTAAGCTTAGTATGGAGACAATTTTGCAACCAAAGACCATTATCTGTATTGGACCCAAAAATGAAAGAAAATTGTTCTGAATTTGAAGTTATAAGGTGCATTCAGATTGGTTTATTGTGTGTTCAAGAAAATCCAGACGAAAGACCTACAATAGCAACAATTGTGTCATATCTTAGTAATATCTCACTTGAATTGCCTTCTCCACGAGAACCAGCATTTTTCTTGCATGCTAAAATGGATCCAACAAAAACAATTGCTGGCGAGTCATCAAGTTCTTTCTCTGTTAATGAGATGTCTGAAAAGTTTTTCATTTTTATCACCAATTGTTCAAATTTGGTGGTTGGAGAGACTGCAGTGATTGCCACCACAGACTACCACGATTGGAAACCTGGGGAGGTTGAAGATGCAGTAGATCGGTCAACAATATCCACAGTGGTTGTTATGCTAGCAAGTGAGACAATGACACTTCCTATTCCTAATCATTCTGCATTTTCAGTTGGAAGAAAGATCAAAGAAGAGCCAACATCAAATGCTTTTGATAAGGATCCTTTGGTCAATGAAGTATCAATTTCAAATATTCTACCTAGATAA 2952 0.4045 MGLNFNSLRLLVFIFSLVSFIMSFPTTTKAKELDYQGPKCSEDRTTFNSTYQVNLMTLFSSLSSKAIITIFYNDTVIDNKDTSSAVYGLFMCRGDVPFDVCGDCVQSASHVLSAECTLSLWGMIWYEQCMVRYSNTRFFSVPETEPFTPMSNNFNVSINQDIFVPLLANTMNKTAEQAAVSLNKYATKEQKVTKLETIFTLAQCTQDLSVGDCRSCLGFAVGQIHECCKGRRGGRVLLPSCNVRFEFYPFYRHGVSKALAPATKYPIMESKYSPDPGYLSHQCSNNQPTNLQKRLTTLLSDLSSKATNSNNNEFYMSNVSNNLFGLYLCRADLPSSLCADCIVNATNRITSECPTSMEAIIWYNHCLLRYSNHSFFRTMGTNPRFKMMNVTDYDDYKSYYKYELWSALTKVAGEIWDRSDRYYAESFVLNDVQRLFVQGQCTKDLATLDCNYCIHDVIETAIPWCCLGSIGGRVLYPSCTLRFELFPFYRNGTDDQPPSTTTTVKTGRSRAVILIIVVPVVALVLLLSFCCYLFRKRARKSYNKTILRKNFGHESDTIGGLQFNLSIIEAATNHFSQENEIGKGGFGQVYKGVLPDGRHIAVKRLSKSSTQGATEFKNEVLLIAKLQHKNLVAFLGFCLEGQEKILIYEYVPNKSLDYFLFDPHSEKLLNWFERYNIIDGIAQGILYLHEYSRLKVIHRDLKPSNILLDENMNPKISDFGLARIIDQQQGSASRVVGTLGYMSPEYAMQGKFFEKSDIFSFGVMILEIITGKKNVGSNVSYRIAEGLLSLVWRQFCNQRPLSVLDPKMKENCSEFEVIRCIQIGLLCVQENPDERPTIATIVSYLSNISLELPSPREPAFFLHAKMDPTKTIAGESSSSFSVNEMSEKFFIFITNCSNLVVGETAVIATTDYHDWKPGEVEDAVDRSTISTVVVMLASETMTLPIPNHSAFSVGRKIKEEPTSNAFDKDPLVNEVSISNILPR 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02538 983 SUPERFAMILY Protein kinase-like (PK-like) 560 870 IPR011009 -
Aip04g02538 983 ProSiteProfiles Gnk2-homologous domain profile. 273 375 IPR002902 -
Aip04g02538 983 ProSitePatterns Protein kinases ATP-binding region signature. 581 603 IPR017441 GO:0005524
Aip04g02538 983 ProSiteProfiles Protein kinase domain profile. 575 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02538 983 Pfam Salt stress response/antifungal 399 484 IPR002902 -
Aip04g02538 983 Pfam Salt stress response/antifungal 40 135 IPR002902 -
Aip04g02538 983 Pfam Salt stress response/antifungal 285 372 IPR002902 -
Aip04g02538 983 Pfam Salt stress response/antifungal 167 247 IPR002902 -
Aip04g02538 983 SMART serkin_6 575 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02538 983 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 503 876 - -
Aip04g02538 983 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 32 256 - -
Aip04g02538 983 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 271 495 - -
Aip04g02538 983 Gene3D Phosphorylase Kinase; domain 1 536 650 - -
Aip04g02538 983 CDD STKc_IRAK 581 848 - -
Aip04g02538 983 ProSiteProfiles Gnk2-homologous domain profile. 33 138 IPR002902 -
Aip04g02538 983 Gene3D Transferase(Phosphotransferase) domain 1 651 854 - -
Aip04g02538 983 ProSiteProfiles Gnk2-homologous domain profile. 144 250 IPR002902 -
Aip04g02538 983 Pfam Protein kinase domain 576 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02538 983 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 256 - -
Aip04g02538 983 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 271 495 - -
Aip04g02538 983 ProSitePatterns Serine/Threonine protein kinases active-site signature. 696 708 IPR008271 GO:0004672|GO:0006468
Aip04g02538 983 ProSiteProfiles Gnk2-homologous domain profile. 381 488 IPR002902 -
Aip04g02538 983 Gene3D - 34 138 IPR038408 -
Aip04g02538 983 Gene3D - 382 488 IPR038408 -
Aip04g02538 983 Gene3D - 147 250 IPR038408 -
Aip04g02538 983 Gene3D - 277 375 IPR038408 -
Aip04g02538 983 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 503 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02538 Aip-Chr4 112399311 112412056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02538 273 886 Receptor kinase-like Gene Family AT4G05200 43.411 2.84e-170 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip04g02538 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02538 - - ahf:112797275 1518.44