Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02524 ATGGAAAAAAGAAAGAAACGTGGTGGTCGTGCGGAAAGGGTAACACGGATGTCTGCGAATTCTGAGAATGTTGGGGTTTGTTCTCTTTGCCAGAAGGCATTATCTCCTGATAATGAGATGACAAGTGATCCTGCGACAGTTGGTGTATGCGGTGATTGTAAATTTTTATTGCTTGAGGACTATGGGAATCATATGGTTACCCCTCAGAGCTTGCAAAGAAGGTTCAGAGGCCGGTTCAGGCGCAACAGCTCTGAGTCTGTTGACAACATGGTTAATAATTTGAGGCAAAGCAGATCTGCGACTGCTTCTTTGGAGGACGTTCAACAAATTGTGGAGGGGGATGCCGCTGCTTGGGCGACGCAGCATGCTAGTTTACATAATACCCCTAGTGGTTCTAGGAGATGGAGGCGGGTTCTCTCTGATACCGACAGTGATGGTTTCGATAATTGGAGCTCACTTTACGGTGAAAATGAATCAAATGAGAGCTTTAGACGGTATAGGATTCCTCATGGTGAGACTGATTCCCTCTCTTTCAGTGCTTATGGAGGTGACTCAGATGTCTCCGTGGATAGACATAGTATTATACATAGAGGAATGTTTGGTTTACCAGATGTGGGAGATGAGTTTGATAGTGACACCGATATAGATCCAATGCATGCCGGTGTCAGTCACTGGCACTCAGATGATATGGAAGATGATGAGGAAGAGGAGGAGGACAATGAGGACGATGATGAGGAGGAGGAAGAGGATGTCCAAGGGGAATGGGAAATAGCTGATGCTGTAGAAGCGGAAGCCACAGCTCGCCTTCAAATGTTTTTCACCTCAAATTCGAGTGCAAGTAGGGGTAGCAATGTTCGGGTACAAAGGTTTGATTCCGCTGAATCTGAGGTGGTCCAAATGGTCAGTAGCTGGGGAGCTGACTTGGAGGATACTGGCTTACATCCCTATGGTGCCAACTTTGGGGACTATCTCGATGCTAGACAATTCGAAGATTTTCTTGAGCATCTTGCTGAGAATGACAATTCGAGACGAGGAGCACCTCCTGCATCTTTGTCATTTGTGAACAATCTGCCCCGCGTAGTCGTTGACAAGGACCATGAGAAGCATGGTGAACTAGTTTGTGCCATTTGCAAGGATGCATTGGTACTTGGGACTGAAGCTAGTCAGCTTCCGTGCTCTCACCTTTATCATGGAAGTTGCATTTTACCGTGGTTGAGCACACGGAATTCATGTCCTCTCTGCCGCCATGAGCTTCCAACTGATGACAAAGATTACGAAGAGGGAAAGCAGAACGGTGTTCTTCGACATGTAAACCATGACAGGCAGCAACTAGAGATGGTGGATGTGGATGATAGTTCCTCTGATGTCTCTGTCTTGGCTGAAGTAAACGAAGCAGATAGTATTAGTCAAAGTGTAATACATCATACAGAAGTTGTAAGTTCGAATTCTTCCACAAATTCTTCGGCAGTAAGAGGTGGTAGAGGAAGATGGTTTTTTCTTGCCGCGGCTCCAATAGTTAGTTTAGTTGGCATTGTGCTTGTCCTGTGGTTAGGTAACTCACAGATTGAAGGGAATAGGCATCTCAGCGGGCGCAACATGTCCGCACAAGATCATCATACCACCAATGTTTATGCCACACCCGTCCAAAGGGAGAGCAGAAGCAGAAGATGGTGGTGCCCTTTCTAA 1686 0.4632 MEKRKKRGGRAERVTRMSANSENVGVCSLCQKALSPDNEMTSDPATVGVCGDCKFLLLEDYGNHMVTPQSLQRRFRGRFRRNSSESVDNMVNNLRQSRSATASLEDVQQIVEGDAAAWATQHASLHNTPSGSRRWRRVLSDTDSDGFDNWSSLYGENESNESFRRYRIPHGETDSLSFSAYGGDSDVSVDRHSIIHRGMFGLPDVGDEFDSDTDIDPMHAGVSHWHSDDMEDDEEEEEDNEDDDEEEEEDVQGEWEIADAVEAEATARLQMFFTSNSSASRGSNVRVQRFDSAESEVVQMVSSWGADLEDTGLHPYGANFGDYLDARQFEDFLEHLAENDNSRRGAPPASLSFVNNLPRVVVDKDHEKHGELVCAICKDALVLGTEASQLPCSHLYHGSCILPWLSTRNSCPLCRHELPTDDKDYEEGKQNGVLRHVNHDRQQLEMVDVDDSSSDVSVLAEVNEADSISQSVIHHTEVVSSNSSTNSSAVRGGRGRWFFLAAAPIVSLVGIVLVLWLGNSQIEGNRHLSGRNMSAQDHHTTNVYATPVQRESRSRRWWCPF 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02524 561 ProSiteProfiles Zinc finger RING-type profile. 374 415 IPR001841 -
Aip04g02524 561 Coils Coil 227 250 - -
Aip04g02524 561 MobiDBLite consensus disorder prediction 208 253 - -
Aip04g02524 561 PANTHER OS06G0101300 PROTEIN 299 464 - -
Aip04g02524 561 Pfam Ring finger domain 374 415 IPR001841 -
Aip04g02524 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 334 421 IPR013083 -
Aip04g02524 561 SMART ring_2 374 414 IPR001841 -
Aip04g02524 561 SUPERFAMILY RING/U-box 356 421 - -
Aip04g02524 561 MobiDBLite consensus disorder prediction 229 253 - -
Aip04g02524 561 MobiDBLite consensus disorder prediction 212 228 - -
Aip04g02524 561 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 299 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02524 Aip-Chr4 112064944 112067485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02524 17 561 C3H Transcription Factor Family AT5G01980 39.860 2.12e-110 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02524 - - gmx:100800933 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02524 04 112064944 112067485 Aip04g02524 04 112064944 112067485 ECH