Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02502 ATGGAATCGAACACAGACATGTTCAGGGTACCTTCTGCAGGAGGAGGAGGAGGAGGAACGGGACCATCGCCTTCGTCTTCGTCTTCGTCTTCCTCTTTGGTTTCTTCGTCGTCTTCGTCATTGTCGTCTTCTAATTCTAGAAGGTTCGGAACTATTTCTCCCTCTAACATCATTAACGCACCGCTGTCGCTATTATTGGAATATTCAGGGATTCTTCGCAACAATAACAACACCACCACCACCAGGTCGAATTTCAATAACCACGAACCTAACCCTAACCCTAATTCCGAGCCTTCCGTAAATGACGGCGAGTTATCGATCAGGATCATTAGTCCTTCCGAACACGATAATCACGATAATCATCGTCACAGGGAGGAGCAACCTTCGTCTTCTGGTGGGGGTGGTTTGGTTGTGGGGCTTCCTCACGATGAGGGTGGGTCCGTTATGCCCAATTCGAGCACCGGAGACACCGGGATTGGGAACGGGAATGGGATTGGAAACGGCGACGCGGGGACCGGCGGTGAGGGGGGCGGCAATGGGAGGGATTCTTCTTACCAGAGGTATGATATTCAGCATGCTGCAAGGTGGGTGGAGCAGGTTCTTCCGTTCTCTTTGCTCCTCTTGGTGGTCTTCATCCGCCAGCATTTACAAGGGTTTTTTGTTACAATTTGGATTGCGGCTGTCCTTTTCAAGTCGAATGACATTCTAAGAAAACAAACAGCTCTGAAGGGAGAGAGGAAAATACCTATTCTCATTGGGATTTCTGTTGCATTTTCACTTCATGTGATTAGCATCTATTGGTGGTATCAGAATGATGATCTGATGTATCCGCTGGTCATGCTTCCTCCGAGAGAGATACCGCCTTTCTGGCATGCAATTTTCATCATCATGGTTAATGACACTTTGGTCCGCCAGGCTGCAATGGTATTCAAGTGTATATTGTTGATCTATTACAAGAACAGCAGAGGCCGAAATTATCGTAGGCAGGGGCAAATGCTGACTCTAGTTGAGTACCTTCTTTTGCTATACCGTGCCTTGCTGCCGACACCGGTTTGGTATCGTTTCTTTCTAAACAAAGAATATGGAAGCCTTTTTTCATCATTGATGACAGGACTGTATCTAACATTTAAGCTCACATCCGTGGTTGAAAAGGTGCAAGCCTTCTTTGCTGCAGTGAAGGCATTGTCACGGAAAGAAGTTCATTATGGTTCTTATGCAACATCAGAGCAGGTGATTGCGGCTGGTGATCTTTGTGCTATTTGTCAAGAGAAGATGCATGCTCCAATATTACTTCGTTGTAAACACATCTTCTGTGAAGATTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCAGCAGACTTGAGGTCATTTGGTGATGGTTCTACTAGTTTATTCTTCCAGTTATTCTAA 1440 0.4618 MESNTDMFRVPSAGGGGGGTGPSPSSSSSSSSLVSSSSSSLSSSNSRRFGTISPSNIINAPLSLLLEYSGILRNNNNTTTTRSNFNNHEPNPNPNSEPSVNDGELSIRIISPSEHDNHDNHRHREEQPSSSGGGGLVVGLPHDEGGSVMPNSSTGDTGIGNGNGIGNGDAGTGGEGGGNGRDSSYQRYDIQHAARWVEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKIPILIGISVAFSLHVISIYWWYQNDDLMYPLVMLPPREIPPFWHAIFIIMVNDTLVRQAAMVFKCILLIYYKNSRGRNYRRQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQAFFAAVKALSRKEVHYGSYATSEQVIAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02502 479 MobiDBLite consensus disorder prediction 109 128 - -
Aip04g02502 479 MobiDBLite consensus disorder prediction 19 54 - -
Aip04g02502 479 SMART ring_2 418 455 IPR001841 -
Aip04g02502 479 MobiDBLite consensus disorder prediction 77 182 - -
Aip04g02502 479 Pfam Zinc finger, C3HC4 type (RING finger) 416 459 - -
Aip04g02502 479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 466 IPR013083 -
Aip04g02502 479 CDD RING-HC_RNFT1_like 417 456 - -
Aip04g02502 479 SUPERFAMILY RING/U-box 409 461 - -
Aip04g02502 479 MobiDBLite consensus disorder prediction 147 161 - -
Aip04g02502 479 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 27 479 IPR044235 GO:0061630|GO:1904294
Aip04g02502 479 MobiDBLite consensus disorder prediction 77 102 - -
Aip04g02502 479 ProSiteProfiles Zinc finger RING-type profile. 418 456 IPR001841 -
Aip04g02502 479 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 27 479 - -
Aip04g02502 479 MobiDBLite consensus disorder prediction 1 54 - -
Aip04g02502 479 ProSitePatterns Zinc finger RING-type signature. 433 442 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02502 Aip-Chr4 111615302 111620032 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02502 47 479 C3H Transcription Factor Family AT5G01960 67.347 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02502 - K22379 aip:107639742 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02502 04 111615302 111620032 Aip04g02502 04 111615302 111620032 ECH