Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02495 ATGAAGACGTTTTCTCCCTCCGACACCTTTTACTGGTACAAGAATGAAGACGTTTCCTCGTACCGAGGTGGCTTGGAGCTGTGGAACCATCATCATCATCATCACCAACCGGAACACAATCTCATACCTCAAACAAGGCCTCTCTTCCACCAAAATTTTTACAGTTCCGCGACTGCTCTAGGAGTGGGTCCAACCACCGTGTCCGACGATCAGTCACCCTCGAGATCGGCCTTCCTGGTGACGGCGTCGGCCGTGGGGAGCGGAGCAGGAAGTGGAGCAGAAAGTGGAGCAGGTAAGATTAGCTGCCAGGACTGTGGGAACCAGGTGAAAAAGGATTGCCCTCACATGCGGTGCAGGACATGCTGCAAGAGTCGTGGCTTCGATTGCCAAACCCATGTCAAGAGCACTTCGGTTCCCACTTTCAAGTGCCGCGAGAGGCAGCAGCAACTCGCCTCTATCCAACAACAACAGCTTCTTGCTGCTGATGTTCTCAAGCGCCAAAGAGATCATGTCtag 516 0.5291 MKTFSPSDTFYWYKNEDVSSYRGGLELWNHHHHHHQPEHNLIPQTRPLFHQNFYSSATALGVGPTTVSDDQSPSRSAFLVTASAVGSGAGSGAESGAGKISCQDCGNQVKKDCPHMRCRTCCKSRGFDCQTHVKSTSVPTFKCRERQQQLASIQQQQLLAADVLKRQRDHV 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02495 171 Pfam Domain of unknown function (DUF702) 99 160 - -
Aip04g02495 171 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 101 141 IPR006510 -
Aip04g02495 171 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 5 161 - -
Aip04g02495 171 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 5 161 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02495 Aip-Chr4 111413870 111414385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02495 5 171 C2H2 Transcription Factor Family AT5G66350 42.857 1.09e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Aip04g02495 DUF702 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02495 - - aip:107636969 326.635