Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02492 ATGCCGGCTCTGAGAAGAACACATGGATGTGCCTTGGCTGTTTTGTGCTGTTTATTCATCTCCATAGCAGCATCACAGCCAACAGATCCTTCAGAAGTAAATGCACTGAAAGGGATAAAGAAAAGTTTGATTGATCCCATGAACAAACTAAAGAGCTGGAATAAGGGTGACCCCTGTAGATCAAACTGGACTGGAGTTTGGTGTTTCGATAAGGTTGGGGATGACGGTTACTTCCATGTCCAGGAGTTGTACTTGATGACTGCGAATCTTTCGGGAACTCTAGCACCTGAACTTGGTCAGCTGTCTCAGCTGGAGATCCTGGATTTCATGTGGAATAAGCTGACAGGCACAATACCAAAGGAGATTGGGAATATTGCAACACTGAAACTCTTGCTTCTGAATGGAAATAATTTATCCGGTAGCTTACCGGATGAGCTCGGCAACCTTACAAAATTAAACAGATTCCAAGTCGACGAAAACCAATTGTCGGGTCCAATCCCAGTGTCATTTGCCAACATGACCAATGTTAAACACCTCCACATGAACAACAACTCATTTAGTGGTCAACTTCCACCGGAACTTTCGAAGCTGCCTAATCTTATCCACCTGCTTGTGGACAACAACAACTTATCTGGTTATCTTCCACCAGAATACTCCATGCTCCAAGGGTTGCGAATACTCCAACTTGATAACAATAATTTCAGTGGGAATGGAATTCCTTCTACCTATGCAAACTTATCCAGGCTTGTAAAACTGAGTCTGAGAAACTGCAATCTACAAGGAACTGTTCCTGATTTCAGCCCAATAGCAAATCTTAGCTATTTAGATCTTAGCTGGAATCATCTTACAGGACACTTGCCAACAAATAAACTTTCAGACAATATGACAACCATCAATCTGGCCAATAACAATCTCAATGGATCTATTCCTCGAAACTTCTCAAACCTGCCTCTTCTTCAGGAACTGTCACTTCAGAACAATATGTTGTCTGGATCCATCCCTGCTGGAATATGGCAGAACATCTCCTTAACTGCAAGTGCTAAACTTAAAATTGATCTCAGTAACAACTCCCTTTCAGACATTCTTGGAAATTCAACTACCCCGGCAAACGTTACCTTGAGGCTTTCTGGCAATCCTATCTGCAAGAATTCTAACATTCATAATATTGTTCAATATTGTGGAAGTGAAGGAAAAGTAGCAGCCATAGCCTTGCAATCAAAACTCAAATGTCCACCTCAAGCCTGTCCATCAGATAGTTTCTTCCAATACGTCCCATCTTCCCCACTTCCTTGCTTTTGTGCAGCACCTTTGAAAATTGGATACAGATTGAAAAGTCCAAGCTTTTCTTACTTTCCTCCCTATATTACTTCTTTTGAGTCATATATAACTGATTCCTTAGACTTAGACCTCTATCAGTTATCAATTGATTCTTATGCTTGGGAAGAGGGACCTCGTCTTAGAATGTACTTGAAAATCTTTCCTTCATACAAACAAAATGGTTCCCATGTGTTCAATGAGAGTGAGGTCCGTCGCATTACAGGCATATTCACATCATGGAAATTTCCTCGAACTGATTTTTTCGGACCATATGAACTCATGAACTTAATTCTTGATGGACCTTATGCGAATCTTACGGGTGGCTCTGAATCAGGGAGGAGTAAAACTAAAACCGGCGTATTAGTTGCTGCTATTGTAGCAGGGGTTGCTTGTGTTTTGGCAATATCTGCTTTGATCTATATCCTGATCACTAGAAAACATATCCAATACCAGGGCAAGCTTTCAAGGAAGCGAGTGTCCACAAATGTATCCATCAAAATAGATGGTGTCAAAGCATTTACTTTCAAAGAGTTGTCTCATGCTACCGACAAATTCGACATCTCAACTAAAGTTGGCGAAGGAGGTTATGGGAATGTATACAAGGGCATTTTATCTGATGAAACATTTGTAGCCATTAAGCGAGCCGAAGAAGGTTCCTTACAAGGTCAGAAGGAGTTTTTGACTGAGATTGAACTATTATCAAGGATACATCATCGAAATCTTGTCCAACTGATCGGATACTGTAATGAAGAAGGGGAGCAGATGCTGGTTTATGAATTCATGCCCAATGGCACCCTAAGGGACTGGATCTCTGGCAAAAAGAGGAGGGGATGCCTGAGTTTTGTTATGAGGCTGAGAATTGCGATGGGTGCAGCTAAAGGGATACTTTATCTACATACAGAGGCCAACCCTCCCATATTCCACAGAGATATCAAAGCAAGCAACATACTTTTGGACTCTAAGTTCACTGCTAAAGTGGCCGATTTTGGACTGTCGCGGCTTGCGCCATTCCTTGAGGAAGAAGGAACCGTCCCTAGATATGTGTCAACCGTTGTGAAGGGTACACCGGGTTATCTGGACCCAGAATACTTGTTGACACATAAGTTGACTGACAAATGTGATGTCTATAGCCTTGGGATAGTGTTCCTCGAACTTATAACCGGCATGAAACCAATATCACACGGGAAAAACATTGCCCGCGAGGTTAACGTGGCTCGCCAATCTGACACAATAGATTCCATCATAGACAGCAACATGGGAGGGTTCTATCCATCAGATTGTATAGACAAGTTCCTAAGTCTTGCCCTGAGTTGCTGCCAAGACAATCCAGAGCAAAGGCCATCAATGTTGGACGTTGTTAGGGAACTTGAAGACATCATTGGAATGCTGCCAGAGACTGAGACAAGTTTCTCAATCTCTGATATAACCTCTGATAGTTCTGGCAAAATGGCACAATCTTCATCATCAGCATCAAATGTAACTAGGGAGGAACAACACACGTCTTCTTATGTTTCAGGAAGTGACCTTGTCAGTGGTGTGGTTCCCACCATTGTTCCCCGGTGA 2880 0.4233 MPALRRTHGCALAVLCCLFISIAASQPTDPSEVNALKGIKKSLIDPMNKLKSWNKGDPCRSNWTGVWCFDKVGDDGYFHVQELYLMTANLSGTLAPELGQLSQLEILDFMWNKLTGTIPKEIGNIATLKLLLLNGNNLSGSLPDELGNLTKLNRFQVDENQLSGPIPVSFANMTNVKHLHMNNNSFSGQLPPELSKLPNLIHLLVDNNNLSGYLPPEYSMLQGLRILQLDNNNFSGNGIPSTYANLSRLVKLSLRNCNLQGTVPDFSPIANLSYLDLSWNHLTGHLPTNKLSDNMTTINLANNNLNGSIPRNFSNLPLLQELSLQNNMLSGSIPAGIWQNISLTASAKLKIDLSNNSLSDILGNSTTPANVTLRLSGNPICKNSNIHNIVQYCGSEGKVAAIALQSKLKCPPQACPSDSFFQYVPSSPLPCFCAAPLKIGYRLKSPSFSYFPPYITSFESYITDSLDLDLYQLSIDSYAWEEGPRLRMYLKIFPSYKQNGSHVFNESEVRRITGIFTSWKFPRTDFFGPYELMNLILDGPYANLTGGSESGRSKTKTGVLVAAIVAGVACVLAISALIYILITRKHIQYQGKLSRKRVSTNVSIKIDGVKAFTFKELSHATDKFDISTKVGEGGYGNVYKGILSDETFVAIKRAEEGSLQGQKEFLTEIELLSRIHHRNLVQLIGYCNEEGEQMLVYEFMPNGTLRDWISGKKRRGCLSFVMRLRIAMGAAKGILYLHTEANPPIFHRDIKASNILLDSKFTAKVADFGLSRLAPFLEEEGTVPRYVSTVVKGTPGYLDPEYLLTHKLTDKCDVYSLGIVFLELITGMKPISHGKNIAREVNVARQSDTIDSIIDSNMGGFYPSDCIDKFLSLALSCCQDNPEQRPSMLDVVRELEDIIGMLPETETSFSISDITSDSSGKMAQSSSSASNVTREEQHTSSYVSGSDLVSGVVPTIVPR 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02492 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672|GO:0006468
Aip04g02492 959 Gene3D Ribonuclease Inhibitor 266 414 IPR032675 -
Aip04g02492 959 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 9 933 - -
Aip04g02492 959 SUPERFAMILY L domain-like 44 389 - -
Aip04g02492 959 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 933 - -
Aip04g02492 959 Gene3D Transferase(Phosphotransferase) domain 1 700 911 - -
Aip04g02492 959 SMART LRR_typ_2 269 293 IPR003591 -
Aip04g02492 959 SMART LRR_typ_2 221 245 IPR003591 -
Aip04g02492 959 SMART LRR_typ_2 316 340 IPR003591 -
Aip04g02492 959 SMART LRR_typ_2 173 197 IPR003591 -
Aip04g02492 959 Gene3D Phosphorylase Kinase; domain 1 594 699 - -
Aip04g02492 959 CDD STKc_IRAK 630 898 - -
Aip04g02492 959 Gene3D Ribonuclease Inhibitor 196 265 IPR032675 -
Aip04g02492 959 Pfam Protein kinase domain 626 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02492 959 MobiDBLite consensus disorder prediction 913 946 - -
Aip04g02492 959 Gene3D Ribonuclease Inhibitor 29 193 IPR032675 -
Aip04g02492 959 SUPERFAMILY Protein kinase-like (PK-like) 609 922 IPR011009 -
Aip04g02492 959 SMART serkin_6 624 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02492 959 ProSitePatterns Protein kinases ATP-binding region signature. 630 652 IPR017441 GO:0005524
Aip04g02492 959 ProSiteProfiles Protein kinase domain profile. 624 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02492 959 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02492 Aip-Chr4 111362971 111370754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02492 5 959 Receptor kinase-like Gene Family AT5G01950 60.000 0.0 1110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Aip04g02492 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02492 - - gmx:100815005 1437.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02492 04 111362971 111370754 Aip04g02492 04 111362971 111370754 ECH