Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02483 ATGGTGTTGCAGGGATTAACCCCAAAGGAAGTCACGCGGAAGCTCCTGCTGGGAGAACTCGAGTCCAAGAACATGATCAAAGAGAAACAACACATCGAGGATTTGATGGCACGGGTCCAACGCAACAATCTCGTTGCTACACCCAACTTCGCTTCCGTCCTCATAGTCGCCTTCTGCGAATTGGGTCATATCCAAGAAGCTCTTTCGGTGTATAGAAACGTCTCTTCTTTGCCTCTCTTGAAGGCTTGCAACACGCTTCTTCACGCCCTCGTCAACACCCACAGATTTGATTCACTGTGGGAGGTCTATGGAGACATGGTGTCGCGTGGATTCTCCCCTACCGTTGTCAGCTACGGCATTTTAATGCAGTGCTGCTGTAACCAAGTTGATTTTGTTGGTGCACGCAAGTTATTTGATGAAATGCGCCAGGGCAAAATTGAACCAACCGTTGTGGTTTACACTATTATGATCCGTGTTCTTTGCAACGAGGGTCGAATGGGAGATGCCGAGGGCGTCTTCCGTTTGATGAGGGAATCCGGAGTGACGCCTAATTTGTACACTTATAAGACTCTCATGGATGGTTATGACAAGGTAGCTAATGTGATCCGGGTTTTCGAGTTGTATGCTGAAATGCTCTGGTATGGATTGCACCCTAATGTTGTCACATTTACTACTATGATAGATATTCTGTGCAAGGTGGTGAAATTTGGAATTTtggtggctggctCACTGTTTCTTGTTACTTATTTGCATTCTAATTTTCTTCAAATATATTATTCTTCTTTCCAACTTCATTTTAAGGAAATTAACCAAGTGGTGGAGTCACTGAACTTGATGATGCTACAACATTCAAACATTTTCATAGAACAAGATTTTCTGCTTCTGATTCAGATTCTTGTTCTTGTTCTTCTTCTCTTCCCTCAAACTACAATATCTGATCTACATTCAGAAAAGCAAGCACTCCTTGATTTTGCATCAGCATTTCACCATGGCAAAAAGGTGAATTGGAACATGAACACTTCAATGTGCAATTCATGGAATGGAGTTACCTGCAATCCCAAGGGCACAAATGTAATTTCACTGAGGCTACCAGGTGTTGGTTTGAGAGGTTCTCTGCCACCAAACACAATTGGCAAGCTCAATGGTCTCACAAGTCTTAGTCTAAGGTCTAACACATTGAGTGGCAAAATCCCAAATGACATTCTTGCCCTTCATGCCCTAAGGTTTCTATATCTTCAACATAACAATTTCTCAGGTGAATTTCCAAATTTTCTTCCACCTAAGCTTGTGCTTCTTGATTTGTCACATAACTCTTTCACAGGACAAATTTCAGACTCAATCCAAAATTTGACTAATCTAACTGGTTTGTTCCTCAAGAACAATTCACTTATAGGGCCTATTCCTAATGTAACCCTTCCTAGTCTTAAGGATTTGGATTTGAGCTTTAACAACCTTAATGGTTCAATTCCTTTAGCATTTCATAGGTTTCAATCTTCATCATTTGATGGGAATTTGATGCTATGTGGACCACCTTTGACAAAACAATGTTCCTCATCAAGTCCTCTTAGTAGTCCAATGTTGTCTCCAATAATAGTATCTCAAAATTCAAGTTATGTTTCCAAGAAGAGGCCGATTCTCGGGGTGGTGATCGCGGCCGCTTTGGGAGGTTTCGGACTACTTTTTCTACTAGTTTTGATGTTGGTGTTGTGTTTTCTTAAGAGAGTTGGTGAACAAAATGAGGCACCAAAAGAAAGTAAACTTGATGAGAAGCTTAGGGAGGATTTTGGGAGTGGTGTGCAAGAACCTGAGAAGAACAAGTTGGTATTTTTCGGAGGGTGTTCTTATAACTTTGATCTTGAGGATTTGTTGAGAGCTTCAGCTGAAGTTCTTGGTAAGGGAAGTTGTGGAACAACTTATAAGGCAATCTTGGAAGAAGGGACAGTAGTTGTTGTTAAGAGGCTGAAGGAAGCTGCAATTGGGAAGAGAGAATTTGAACAGCAAATGGAAACTGTGCAAAAGCTTGATCAGCATCCAAATGTTGTTCCATTTAGTGCTTACTATTATTCCAAGGATGAGAAGCTAGTGGTTTATGATTACCTACCATTTGGAAGCTTTTCCAAGTTATTGCATGGAACAAGGGAAACTGGAAGAACTCCACTAGATTGGGACACCAGATTGAAGATAATGCTTGGAGCTGCTAAGGGTGTTGCTCATATTCATTCTGCAAGTGGAAGGAAATTTGTCCATGGCAATATAAAATCATCTAATGTGCTACTCTTAGGTGATCTACAAGGCTGCATATTGGATTTCGGCTTAGCTCCTCTAGCGAGTTTCTCAGGCTCCTTTAGGAGTCCTGGATATCGAGCCCCCGAGGTTATTGAGACCCAAAAATCCACACAAAAATCTGATGTGTACAGCTTTGGGGTTCTCCTTCTCGAGATGTTGACCGGCAAAACACCGATTCAGTATTCAGGACATGATGATCCGATTGATCTTCCGAGGTGGGTTCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATCTTGAGCTAATGAGGTATCCAAATATTGAGGAAGAATTGGTGCAAATGCTGCAACTTTCAATGGCATGTGTTGCAATGGTTCCTGACACAAGACCCTCAATGGAGGAAGTTGTAAGGGTTATTGAAGAAATCATAGGATCCTATTCTTAG 2700 0.4133 MVLQGLTPKEVTRKLLLGELESKNMIKEKQHIEDLMARVQRNNLVATPNFASVLIVAFCELGHIQEALSVYRNVSSLPLLKACNTLLHALVNTHRFDSLWEVYGDMVSRGFSPTVVSYGILMQCCCNQVDFVGARKLFDEMRQGKIEPTVVVYTIMIRVLCNEGRMGDAEGVFRLMRESGVTPNLYTYKTLMDGYDKVANVIRVFELYAEMLWYGLHPNVVTFTTMIDILCKVVKFGILVAGSLFLVTYLHSNFLQIYYSSFQLHFKEINQVVESLNLMMLQHSNIFIEQDFLLLIQILVLVLLLFPQTTISDLHSEKQALLDFASAFHHGKKVNWNMNTSMCNSWNGVTCNPKGTNVISLRLPGVGLRGSLPPNTIGKLNGLTSLSLRSNTLSGKIPNDILALHALRFLYLQHNNFSGEFPNFLPPKLVLLDLSHNSFTGQISDSIQNLTNLTGLFLKNNSLIGPIPNVTLPSLKDLDLSFNNLNGSIPLAFHRFQSSSFDGNLMLCGPPLTKQCSSSSPLSSPMLSPIIVSQNSSYVSKKRPILGVVIAAALGGFGLLFLLVLMLVLCFLKRVGEQNEAPKESKLDEKLREDFGSGVQEPEKNKLVFFGGCSYNFDLEDLLRASAEVLGKGSCGTTYKAILEEGTVVVVKRLKEAAIGKREFEQQMETVQKLDQHPNVVPFSAYYYSKDEKLVVYDYLPFGSFSKLLHGTRETGRTPLDWDTRLKIMLGAAKGVAHIHSASGRKFVHGNIKSSNVLLLGDLQGCILDFGLAPLASFSGSFRSPGYRAPEVIETQKSTQKSDVYSFGVLLLEMLTGKTPIQYSGHDDPIDLPRWVQSVVREEWTAEVFDLELMRYPNIEEELVQMLQLSMACVAMVPDTRPSMEEVVRVIEEIIGSYS 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02483 899 Pfam Protein kinase domain 627 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02483 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Aip04g02483 899 Gene3D Ribonuclease Inhibitor 315 427 IPR032675 -
Aip04g02483 899 SUPERFAMILY L domain-like 332 512 - -
Aip04g02483 899 PANTHER OS05G0588300 PROTEIN 298 895 - -
Aip04g02483 899 Pfam Leucine rich repeat 371 417 IPR001611 GO:0005515
Aip04g02483 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Aip04g02483 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Aip04g02483 899 Gene3D Phosphorylase Kinase; domain 1 593 699 - -
Aip04g02483 899 Gene3D Ribonuclease Inhibitor 428 518 IPR032675 -
Aip04g02483 899 Gene3D Transferase(Phosphotransferase) domain 1 701 898 - -
Aip04g02483 899 ProSiteProfiles Protein kinase domain profile. 624 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02483 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Aip04g02483 899 Gene3D Tetratricopeptide repeat domain 143 213 IPR011990 GO:0005515
Aip04g02483 899 SUPERFAMILY Protein kinase-like (PK-like) 628 891 IPR011009 -
Aip04g02483 899 PANTHER OS05G0480400 PROTEIN 298 895 - -
Aip04g02483 899 Pfam Leucine rich repeat N-terminal domain 316 352 IPR013210 -
Aip04g02483 899 TIGRFAM PPR: pentatricopeptide repeat domain 82 115 IPR002885 -
Aip04g02483 899 TIGRFAM PPR: pentatricopeptide repeat domain 116 150 IPR002885 -
Aip04g02483 899 TIGRFAM PPR: pentatricopeptide repeat domain 151 184 IPR002885 -
Aip04g02483 899 Pfam PPR repeat family 148 195 IPR002885 -
Aip04g02483 899 Pfam PPR repeat family 82 127 IPR002885 -
Aip04g02483 899 Gene3D Tetratricopeptide repeat domain 1 142 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02483 Aip-Chr4 111167349 111174284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02483 301 894 Receptor kinase-like Gene Family AT5G58300 59.211 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Aip04g02483 Pkinase 1.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02483 - - gmx:100810832 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02483 04 111167349 111174284 Aip04g02483 04 111167349 111174284 ECH