Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02474 ATGTTCTCGGACCATCGAATCCGGAGCCgtctaagttttgaaaagGGATTGGATGAACGGTTTTCGGTGGTGCGATCTCAAATACTTCTCCTAGACCAATTACCTCCAGCAACCAGAGTTTTTGCATTGGTCATCCAACATGAACGACAGCTACAAGTTACTGCTGGGATTCTAGACGATCCACGTTCCATCACTGCCGCCGTCGATTCGCGGCACCCCTCACAAGGTCGCGGTCGCGGTCGCTTTTCCTCCGGCAAGGGTCGCGGTGGTTTTCCCTCCAGCGCGGGACGTGGTGGTTCCTCTAAGTTCTGTACGCATTGCAGTCGTAGTGGCCACACGATTGAAGTCTGTTATTCGAAACACGGGTTCCCACCAGGGCATCCACGTCACTCTGGTAGTCCACATCACTCCGTTGCTGTCGCCGCCGCCACTCCTTCAATCGCCCCTCCAGTGTATGATGAGAGGGCAGccctagGCCCTCCTCGCGTTCGTCCAACGCCAGCGTCTCCAGGTCCTGTTCCGCAGCTCTTCGCTCGTCGTCTGTCGCCAGCTCGACAGTGTTCGTTGCCAGCTTCCTGTTGTCCGTCGATCTCCGTCAAATCTCCGCTCCCTGCCCTCGCCGAAGCCATGGGATTTAGAAACCTGGGGCCACTTGGATTATTTGCCAAAGAGGGGTTGGAAAAAGCATTCTCTCTTGGAAAGTTCTTCTGTTTTCTACATGTCACCGACACCTATTTGGTCACCTTTGTTGTGACATCTGGTCCCAGCATGCTTCCCACAATAGATTTGATCCCAACAATGTTTTTGGGTGAAAGGATCTCAACTAGATTTGGTAAAGTTACTCGTGGAGATATTGTGATTATTCGCTCCCCTCAAAACCCTAGGAAGCTTATTGCTAAACGATTGGTTGGAATGGAGGATGATACTGTTACATACATTTCTAACCCTGATGAGCCTGATAAGCAGGAAACTATTGTGGTTCCAAAGGGTCACGTTTGGATACAGGGTGATAATGCATATAAATCCAATGATTCAAGGAATTTTGGTGCTGTTCCTTATGGACTTATTCAGCACAGGCTATTTTGGAGGGTATGGCCAATCAAAGGTTTTGGACCTTTCTGGAAACACTGA 1131 0.4925 MFSDHRIRSRLSFEKGLDERFSVVRSQILLLDQLPPATRVFALVIQHERQLQVTAGILDDPRSITAAVDSRHPSQGRGRGRFSSGKGRGGFPSSAGRGGSSKFCTHCSRSGHTIEVCYSKHGFPPGHPRHSGSPHHSVAVAAATPSIAPPVYDERAALGPPRVRPTPASPGPVPQLFARRLSPARQCSLPASCCPSISVKSPLPALAEAMGFRNLGPLGLFAKEGLEKAFSLGKFFCFLHVTDTYLVTFVVTSGPSMLPTIDLIPTMFLGERISTRFGKVTRGDIVIIRSPQNPRKLIAKRLVGMEDDTVTYISNPDEPDKQETIVVPKGHVWIQGDNAYKSNDSRNFGAVPYGLIQHRLFWRVWPIKGFGPFWKH 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02474 376 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 210 375 - -
Aip04g02474 376 SUPERFAMILY LexA/Signal peptidase 244 374 IPR036286 -
Aip04g02474 376 MobiDBLite consensus disorder prediction 68 101 - -
Aip04g02474 376 ProSitePatterns Signal peptidases I signature 3. 332 345 IPR019758 GO:0004252|GO:0016021
Aip04g02474 376 Gene3D Umud Fragment, subunit A 242 374 - -
Aip04g02474 376 CDD S26_SPase_I 249 357 IPR019533 GO:0004252|GO:0006465
Aip04g02474 376 PRINTS Bacterial leader peptidase 1 (S26A) family signature 245 261 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aip04g02474 376 PRINTS Bacterial leader peptidase 1 (S26A) family signature 298 310 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aip04g02474 376 PRINTS Bacterial leader peptidase 1 (S26A) family signature 327 346 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aip04g02474 376 Pfam Signal peptidase, peptidase S26 322 365 IPR019533 GO:0004252|GO:0006465
Aip04g02474 376 Pfam Signal peptidase, peptidase S26 237 312 IPR019533 GO:0004252|GO:0006465
Aip04g02474 376 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 210 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02474 Aip-Chr4 110965647 110975098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02474 257 373 MADS-box Gene Family AT1G29960 53.846 9.38e-41 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02474 K09647 - adu:110278129 248.825