Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02472 ATGGCGCAAATCAGAGTAGAGGTAACAGACGCAGACGAACAGCGGCAGCTCAACGGGGAACAACGACTGCGGCAGAACATGGAGAAAGTAAAACTTGAGAGAAACGACGCAGGTGTTTTGGTCCCAAGGAATGTAAATAATGTAGAACAAGAGAGGATAAAGAAGAGTGGCAATAAGGGGAGGAATGTGAAAGTTGGAATTGAAGGAGCAGAAGAATTTGGTGAATGTGAGGAGTGGTTCAATTACAGACTCTCCAGAGCAGCTCCAGAAATGTGTGCTAGGTTTCTTGGAAGTTTTGTTGCTGATAAAAGCAATTCACTTTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAATTTGAGGCGCTCTTATTTATGGTTATGATGTCACAGGGTGGCCATTCTTTCGCCGACTACATGACGGAACGAAACTTTCCTTCAAACTTGGAATCTGTCATGTTTCGACGAGTCTTGCAAGGGATAAACTCGTCGAAAAGAGATGCCTTGATCATCAAGCAAATGATTACTTCGCTTAAGAAGATTCATGATACATGCATTGTTCACAGGGATATAAAGCCTGCCAACTTGGTGGTTACAAAGCAGGGACAGATCAAACTCATTGATTTTGGTTCAGCTACTGATCTACGAATCGGAAAGAATTATGTTCCCAATTTTACCCCTTTGGATCCTGACTATTGTCCCCCAGAATTGTATGTGCTGGCTGAAGAAATAACTAGTCTTCCTCCAGAGCCAGTTGCAGCTTTTCGTTCACCAATATTATGGCAGTTGAAAAGTCCTGATCTATTTGACATGTATTCTGCTGGGATTATACTCTTGCAAATGGCAATACCAACCTTAAGGTCTAAATCTACTCTGAAGAATTTCAATTTGGAATTAAGGAACTGTGGATTTTACCTGAAAAAATGGCGGGACTTTACTCGCAACTGGTTTGATTTTCGAATCCTCGACGGGGACTCTGGTAGAGGTTGA 987 0.4205 MAQIRVEVTDADEQRQLNGEQRLRQNMEKVKLERNDAGVLVPRNVNNVEQERIKKSGNKGRNVKVGIEGAEEFGECEEWFNYRLSRAAPEMCARFLGSFVADKSNSLFTKGGKWLVWKFEALLFMVMMSQGGHSFADYMTERNFPSNLESVMFRRVLQGINSSKRDALIIKQMITSLKKIHDTCIVHRDIKPANLVVTKQGQIKLIDFGSATDLRIGKNYVPNFTPLDPDYCPPELYVLAEEITSLPPEPVAAFRSPILWQLKSPDLFDMYSAGIILLQMAIPTLRSKSTLKNFNLELRNCGFYLKKWRDFTRNWFDFRILDGDSGRG 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02472 328 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 37 328 IPR044803 GO:0004674|GO:0009579
Aip04g02472 328 Gene3D Transferase(Phosphotransferase) domain 1 158 328 - -
Aip04g02472 328 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Aip04g02472 328 ProSiteProfiles Protein kinase domain profile. 1 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02472 328 SUPERFAMILY Protein kinase-like (PK-like) 120 282 IPR011009 -
Aip04g02472 328 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 37 328 - -
Aip04g02472 328 SMART serkin_6 62 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02472 328 Gene3D Phosphorylase Kinase; domain 1 40 119 - -
Aip04g02472 328 Pfam Protein kinase domain 161 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02472 Aip-Chr4 110954187 110958037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02472 125 230 MAP Kinase Kinase Gene Family AT4G29810 27.027 3.25e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Aip04g02472 Pkinase 3.7e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02472 - - gmx:100795624 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02472 04 110954187 110958037 Aip04g02472 04 110954187 110958037 ECH
Aip04g02472 04 110954187 110958037 Aip02g00619 02 9304227 9306930 PCT