Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02471 ATGGTTTCCTCTCAGCTTTCTGGTTTGACTACGGCTGGCACATATAAGCCTTTACAGGCTCAGTTGCTCTTTCCTACAAGTCTTCCTGAAAACGTAATCACAGATCACATTGAACTAGATTTCTCAGATGTCTTTGGTCCGGTTACAGTTCCATCCTCAGTAGAAGTAAATAATATTGAATCTGCTGCTGCAGAGTATTTCGAAGAATCTAGTGAGCTGGTTTATAATGAGCCTGAAGTCATTTACACCCGTTCACATTCTTTGGTTGGCCCTTCTGCTTGTGTTAGCCAATCACTGAAGCTTGGAAAGCTCACCATACAAGAAACTGAAGATTCATTGGAACTAGAGGTCCTAGAGGAGGATGTGACTGGAGAGAAGGTCAAAGACGTCAAAGAATCTTCCTTTCACAATGTTATCACCGAGGAATCGTTGCAAGACGGCGGGAGTCTCATGAAGATTCACAGAGTTAGCCTTGATGATTTTGAGATTTTGAAGGTTGTGGGGCAGGGAGCATTTGCAAAAGTATATCAGGTGAAGAAAAAGGGAACTTCTGAAATATATGCTATGAAGGTTATGAGGAAGGACAAAATTCTGGAAAAGAACCATGCTGAGTACATGAAAGCTGAGAGGGATATTTTGACACAAATAGAGCATCCTTTTGTTGTACAACTCAGATACTCGTTTCAGACAAAATATAGATTGTATCTCGTGCTGGATTTCGTGAATGGGGGGCATCTTTTCTTTCAACTTTATCACCAGGGCTTGTTCAGAGAGGATCTAGCACGCATATATGCTGCCGAGATTGTGTCTGCAGTTTCACATCTCCATTCGAATGGAATAATGCACAGGGATCTAAAACCTGAAAATATCTTGCTGGATGCTGATGGCCATGTTATGTTGACTGATTTTGGTTTAGCGAAGCAATTCGAGGATAGTACAAGATCAAATTCTATGTGTGGAACATTAGAGTACATGGCACCTGAAATTATTCTTGGCAAGGGCCATGATAAGGCTGCTGATTGGTGGAGTGTAGGCATCCTTCTGTTTGAGATGCTTACTGGAAAGCCACCGTTTTGTGGTGGGAACCGTGAGAAAATTCAGCAGAAGATAATTAAAGACAAGATTAAGCTGCCAGCATTTTTGTCTAGTGAGGCGCATTCTCTGTTGAAAGGGCTTCTACAGAAGGAGGCGGGAAAGCGCTTAGGTTGTGGACCTAAGGGGATAGTGGAGATTAAAGGCCACAAGTGGTTTAAACAAATCAACTGGACGAAGTTGGAAGCAAGAGAAATCCAGCCAAATTTTAGGCCGGATGTAGCCGGGAAGCATTGCGTTGCGAACTTTGAGAAGCGATGGACTGATATGCCTGTGGTCGATTCACCAGCTGCCAGCCCGAATGGTGCTAACCCCTTCAAAGACTTCTCTTATGTGAGGCCTGCAGCCTCCTTCCTTCAAAGGAATAGCCCTGCTTGTTAA 1473 0.4338 MVSSQLSGLTTAGTYKPLQAQLLFPTSLPENVITDHIELDFSDVFGPVTVPSSVEVNNIESAAAEYFEESSELVYNEPEVIYTRSHSLVGPSACVSQSLKLGKLTIQETEDSLELEVLEEDVTGEKVKDVKESSFHNVITEESLQDGGSLMKIHRVSLDDFEILKVVGQGAFAKVYQVKKKGTSEIYAMKVMRKDKILEKNHAEYMKAERDILTQIEHPFVVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARIYAAEIVSAVSHLHSNGIMHRDLKPENILLDADGHVMLTDFGLAKQFEDSTRSNSMCGTLEYMAPEIILGKGHDKAADWWSVGILLFEMLTGKPPFCGGNREKIQQKIIKDKIKLPAFLSSEAHSLLKGLLQKEAGKRLGCGPKGIVEIKGHKWFKQINWTKLEAREIQPNFRPDVAGKHCVANFEKRWTDMPVVDSPAASPNGANPFKDFSYVRPAASFLQRNSPAC 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02471 490 SMART serkin_6 161 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02471 490 Gene3D Phosphorylase Kinase; domain 1 158 459 - -
Aip04g02471 490 Gene3D Transferase(Phosphotransferase) domain 1 241 436 - -
Aip04g02471 490 PANTHER RIBOSOMAL PROTEIN S6 KINASE 1 488 - -
Aip04g02471 490 ProSitePatterns Protein kinases ATP-binding region signature. 167 190 IPR017441 GO:0005524
Aip04g02471 490 Pfam Protein kinase domain 161 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02471 490 ProSiteProfiles AGC-kinase C-terminal domain profile. 418 485 IPR000961 GO:0004674|GO:0005524|GO:0006468
Aip04g02471 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Aip04g02471 490 SMART pkinase_C_6 418 477 IPR000961 GO:0004674|GO:0005524|GO:0006468
Aip04g02471 490 SUPERFAMILY Protein kinase-like (PK-like) 158 478 IPR011009 -
Aip04g02471 490 Pfam Protein kinase C terminal domain 439 475 IPR017892 GO:0004674|GO:0005524|GO:0006468
Aip04g02471 490 ProSiteProfiles Protein kinase domain profile. 161 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02471 490 PANTHER SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19 1 488 - -
Aip04g02471 490 CDD STKc_AGC 167 417 IPR045270 GO:0004674|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02471 Aip-Chr4 110950273 110953130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02471 1 487 AGC Kinase Gene Family AT3G08720 67.006 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Aip04g02471 Pkinase 8.6e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02471 K04688 - gmx:100805922 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02471 04 110950273 110953130 Aip04g02471 04 110950273 110953130 ECH