Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02467 ATGAGTTCTAATCAACCACTTCTCTCTGATTCAGATCTTCCTCCACTGATTCAACACCGCCCGAAGAAATCAGGATCCATAGCTTCCTCTGTGTTTGACGATGCTTCTGAATCTCATCATAAAACAGGTCTTGATCTGACGGAAGACAAAGACTATGATTTAGCTAGTGAAGCTAGCTTCCATTCAGCACTTGAGACCAATTTCACTTTTGTGACAGAGAAAGATTTCAACTTTGGTGAGTCCCATTTGCCCCACAAACACCACACGCACCCTTTGGAATGCTCCACGAAGGAGAGGGTGCGAGGGGTATCGTGGGGTGCAATGGAACTGCATGATGCCACCACCAATAGTAGTAGCACTAGTGTGCCCTTTGAAATCTCAGGTTCTTCTTCACAACAGCATGTAGTTCATCATGATAATAGGTTGAGTAGTAATCACAATAATTATAGTAAGCCTCAGAGGGTTAGGCACAAGAGCAGCGTGCAGTTTGATGATGCTTTGTTGCATGATGATAGTGCTAGGTTGATATATATTAATGATCCTAAGAGGACTGATGATAAGTGTGAGTTGCCGGGGAATGAGATCAGGACTAGTAAATACACAATTGTTACCTTCTTGCCTAAGAATCTTTTTATTCAGTTTCATAGGGTTGCTTATTTGTATTTCCTTGCTATTGCGGCTCTCAATCAGCTTCCTCCCTTGGCCGTATTTGGGAGGACTGTGTCACTCTTCCCGCTATTGTTTGTGCTCTGCGTCACGGCTATTAAGGATGGATATGAAGACTGGCGGCGGCACAGGTCGGATCGCAATGAGAACAACCGGGAATCATTGGTGCTTCAGCATGATGATTTCCGGCCGAAGAAGTGGAAGAATATACAAGCTGGTGAGGTTGTTAAGATCTTTGCTGATGAGACGATTCCAGCTGACATGGTCTTGCTGGGGACAAGTGATCAAAGTGGGCTTGCCTATATTCAGACAATGAATTTGGATGGAGAGTCGAATTTGAAGACTAGGTATGCTAAGCAGGAAACAACTGCTGCAGTTTCTTCGGAAGCTTGTCGTGTTTCTGGGGTTATCAGATGCGAGCAGCCTAACCGGAATATTTATGAGTTCACGGCAAACATGGAGTTCAACGGACTTAAGTTTTCGCTTAGCCAGTCTAACATTGTTCTGCGTGGTTGCCAACTGAAGAACACAGATTGGATCATTGGTGTTGTGGTTTATGCGGGACAAGACACAAAAGCAATGATGAACAGCACACCTTCTCCTTCTAAGAGAAGCAAACTTGAAAGTTACATGAACAGAGAAACCCTTTGGTTGTCGATTTTTCTTTTCATCATGTGTTTAGTTGTGGCCATTGGGATGTGTCTTTGGCTGGTGCGGCACAACAGCCAGCTTGATACCTTGCCTTACTACAGAAAACGATACTTCAACAATGGGCCAGATAATAGAAAGAGATACAAGTATTATGGGATACCAATGGAGGCATTTTTCTCCTTCTTGAGTTCCATTATAGTGTTTCAGATAATGATACCAATATCTCTTTACATCACGATGGAATTGGTTCGTTTGGGCCAGTCATACTTCATGATTGAAGATGGGGATATGTATGATGCTAACTCTGGATCAAGGTTTCAGTGTAGGTCATTAAATATAAATGAAGATTTGGGTCAAATACGCTATGTATTTTCAGACAAGACAGGAACACTAACCGAAAACAAAATGGAATTCCAGAGAGCTAGTGTATATGGGAAGAATTACGGGAACTCGTTGGTCGTGGCTGATGATACAGCTGCCCCTGTTATTCCTAGACGGAGATGGAAGCTCAAATCTGAAATCAGAGTTGATTCTGAACTGCTGACAGTGTTGCAGAGTGAATCACATGGAGATGACAGAATTGCTGCGCATGAGTTTTTTCTTACATTGGCAGCTTGCAATACTGTGATCCCTATTCCTACTGGTGGTACATTTTCCAGTCCTGGAACAAGTGAATCAGATGAAGATATGGAAGGTATTGAGTACCAGGGAGAATCCCCTGATGAACAAGCTCTAGTCTCTGCTGCTTCTGCATATGGATATACTCTTTTTGAGCGAACATCCGGACACATTGTCATCGACGTCAATGGTGAGAAGCTCAGATTGGACGTATTGGGCCTACACGAGTTTGATAGTGTGCGCAAGAGGATGTCTGTTGTTATTCGTTTTCCCAACAACGTTGTAAAGGTGTTAGTCAAAGGTGCTGATACTACAATGTTTAGCATTTTAGCAAATGACAGTGAGAGCCACAATACCATACGAGATGTAACTCAGAGTCATCTGAATGAATATTCTTCACTAGGTCTGCGCACTCTTGTAGTTGCATCTAGAGATCTTTCAGATGCTGAACTTGAAGAGTGGCAAAGCATGTATGAAGAGGCAAGCACTTCTTTGCATGAAAGAGCTGCTAAACTACGTCAAACAGCAGCGTTTATAGAATGCAACTTAAAGCTACTTGGAGCAACGGGAATTGAGGACAAGCTGCAAGAGGGTGTACCAGAAGCCATTGAGTCCCTGCGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAGCAGGAGACAGCAATTTCAATTGGTCTCTCTTGCAAACTTCTCACTGCAGATATGCAACAGATTATTATAAATGGCACTTCAGAGGCTGATTGTCGTAATCTTTTGGGTGATGCTAAAGCTAAATATGGCGTGAGGTCTTCAAGTAATCAGAATCGGAAACAAAAATCCAATGCTGGACTTGGTGATCTTGATATTCCCAATGGTTCGAAGTCATTGAGTTTGCCTAAGTGGAATCCAGGACAGGAAGAAGGAACTACTGCTCCATTGGCACTCATAATTGATGGGAACAGTTTGGTTTATATTTTGGAGAAGGAATTAGAGTCAGAGGCAAGTCTTTTCGACCTGGCAACTTCCTGTAGGGTTGTCTTGTGCTGTCGTGTTGCTCCTTTGCAGAAAGCTGGAATTGTTGCTTTGATAAAGAGCCGCACAGATGATATGACACTGGCAATTGGTGATGGGGCCAATGATGTGTCGATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGGCGCCAAGCGGTGATGGCATCAGATTTTGCAATGGGGCAATTTCAGTTCTTGAAAAAATTACTCCTGGTTCATGGGCACTGGAATTATCAGCGTGTGGCTTACTTAATTCTGTACAACTTTTACCGCAATGCTGTCTTTGTATTGATGTTATTCTGGTATATATTATGCACTGCTTTTTCTACAACATCTGCGTTGACAGATTGGAGTAGTGTATTCTATTCTGTGATATACACATCTGTACCTACCATTTTTGTTGGTATTCTGGACAAAGACTTGAGCCATAGGACACTCTTGAAGTATCCGAAGCTGTACACTGCTGGTCACAGGCAAGAGGCATACAATTTGCACTTATTCTGGATCACAATGATTGACACAGTATGGCAGAGCCTTGTTCTCTTCTACACTCCTTTGTTCACATACAAGGATAGTGCGATTGATATATGGAGCATGGGCAGTTTGTGGACAATTGCGGTTGTTATTCTTGTGAATGTACACCTGGCCATGGACATCAATCGTTGGGTATTAATTACTCATGCTGCTGTATGGGGATCAATAATCATTACATATGGTTGCATGATAGTCTTGGATTCAATACCTGTCTTTCCCAATTACTGGACTATTTATCGTCTGGCAGTGTCCCCTACATATTGGATAACCATTTTGCTTATAATTATCGTAGCGCTGCTCCCTCGCTTTACTTGCAAAGTTGTTTGCCAAATCTTTTGGCCTTCAGATATCCAGATAGCCAGAGAAGCTGAGCTACTGAGAAAACGACATAATCATGTGCAGTCGAGGCAACAAGTTTCCAGTTAA 3930 0.4277 MSSNQPLLSDSDLPPLIQHRPKKSGSIASSVFDDASESHHKTGLDLTEDKDYDLASEASFHSALETNFTFVTEKDFNFGESHLPHKHHTHPLECSTKERVRGVSWGAMELHDATTNSSSTSVPFEISGSSSQQHVVHHDNRLSSNHNNYSKPQRVRHKSSVQFDDALLHDDSARLIYINDPKRTDDKCELPGNEIRTSKYTIVTFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRESLVLQHDDFRPKKWKNIQAGEVVKIFADETIPADMVLLGTSDQSGLAYIQTMNLDGESNLKTRYAKQETTAAVSSEACRVSGVIRCEQPNRNIYEFTANMEFNGLKFSLSQSNIVLRGCQLKNTDWIIGVVVYAGQDTKAMMNSTPSPSKRSKLESYMNRETLWLSIFLFIMCLVVAIGMCLWLVRHNSQLDTLPYYRKRYFNNGPDNRKRYKYYGIPMEAFFSFLSSIIVFQIMIPISLYITMELVRLGQSYFMIEDGDMYDANSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFQRASVYGKNYGNSLVVADDTAAPVIPRRRWKLKSEIRVDSELLTVLQSESHGDDRIAAHEFFLTLAACNTVIPIPTGGTFSSPGTSESDEDMEGIEYQGESPDEQALVSAASAYGYTLFERTSGHIVIDVNGEKLRLDVLGLHEFDSVRKRMSVVIRFPNNVVKVLVKGADTTMFSILANDSESHNTIRDVTQSHLNEYSSLGLRTLVVASRDLSDAELEEWQSMYEEASTSLHERAAKLRQTAAFIECNLKLLGATGIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLTADMQQIIINGTSEADCRNLLGDAKAKYGVRSSSNQNRKQKSNAGLGDLDIPNGSKSLSLPKWNPGQEEGTTAPLALIIDGNSLVYILEKELESEASLFDLATSCRVVLCCRVAPLQKAGIVALIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKKLLLVHGHWNYQRVAYLILYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSVPTIFVGILDKDLSHRTLLKYPKLYTAGHRQEAYNLHLFWITMIDTVWQSLVLFYTPLFTYKDSAIDIWSMGSLWTIAVVILVNVHLAMDINRWVLITHAAVWGSIIITYGCMIVLDSIPVFPNYWTIYRLAVSPTYWITILLIIIVALLPRFTCKVVCQIFWPSDIQIAREAELLRKRHNHVQSRQQVSS 1309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02467 1309 Pfam Phospholipid-translocating ATPase N-terminal 176 241 IPR032631 -
Aip04g02467 1309 SFLD p-type atpase 547 1066 IPR044492 -
Aip04g02467 1309 SUPERFAMILY HAD-like 558 1061 IPR036412 -
Aip04g02467 1309 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 163 1307 - -
Aip04g02467 1309 Gene3D - 828 1055 IPR023214 -
Aip04g02467 1309 SFLD Haloacid Dehalogenase 547 1066 - -
Aip04g02467 1309 ProSitePatterns E1-E2 ATPases phosphorylation site. 565 571 IPR018303 -
Aip04g02467 1309 CDD P-type_ATPase_APLT_Dnf-like 192 1175 - -
Aip04g02467 1309 PRINTS P-type cation-transporting ATPase superfamily signature 1015 1034 - -
Aip04g02467 1309 PRINTS P-type cation-transporting ATPase superfamily signature 563 577 - -
Aip04g02467 1309 SUPERFAMILY Calcium ATPase, transmembrane domain M 192 1282 IPR023298 -
Aip04g02467 1309 Gene3D - 249 419 - -
Aip04g02467 1309 Pfam Phospholipid-translocating P-type ATPase C-terminal 1043 1283 IPR032630 -
Aip04g02467 1309 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 163 1307 - -
Aip04g02467 1309 MobiDBLite consensus disorder prediction 1 26 - -
Aip04g02467 1309 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 191 1290 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Aip04g02467 1309 Pfam E1-E2 ATPase 277 521 - -
Aip04g02467 1309 SUPERFAMILY Calcium ATPase, transduction domain A 274 416 IPR008250 -
Aip04g02467 1309 Gene3D - 674 809 IPR023299 GO:0000166
Aip04g02467 1309 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 569 844 IPR023299 GO:0000166
Aip04g02467 1309 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 824 879 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip04g02467 1309 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 985 1101 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip04g02467 1309 Pfam Cation transport ATPase (P-type) 676 752 - -
Aip04g02467 1309 MobiDBLite consensus disorder prediction 910 944 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02467 Aip-Chr4 110782998 110789230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02467 126 1294 Primary Pumps ATPases AT5G04930 55.735 0.0 1311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02467 K14802 - gmx:100812459 2061.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02467 04 110782998 110789230 Aip04g02467 04 110782998 110789230 ECH
Aip04g02467 04 110782998 110789230 Aip02g00617 02 9297393 9302085 PCT