Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02434 ATGCAATTGCAACGGCGTGTTCTCGAAACAGGGTTAAGCATTTCACCATCTTCTTCATCATCTTCTTCTTCTTCGATCATCAATGAAGCGAACTTCGACACCAACATGGTGATAATCCTGGCGGCGCTAATGTGCGCACTGGTGTGCGCCTTGGGTCTGAACTCCATAGCACGGTGTGCGCTCCGGTGCGGACGGAGGCTGACGGCGGAGCAAGAGGCGGAGAGGCTGGCGACGACGGGGCTCAAGAAGAGCCACCTGAGGAGGATTCCCGTGGCGGTGTACGGCTCCGGCGAGAATATTCCGGCGACGGAGTGCCCAATATGTTTGGGTGAGTTCGAGAGAGGGGATAAAGTTAGAATGCTTCCTCAGTGTAACCACGGGTTTCACGTGAAGTGTATTGACACGTGGCTCGTTTCGCATTCGTCTTGCCCTAATTGCCGACACTCCTTGCTTGAGAAGCCTAAGGTAAATAATAGTGGTTCTGCTTCTTCAGGTGGTGGTGACGGCGGCGGTGGTGGGGGAGGCGGGGGAGGAAACATGGTGATCGTCCTCGACCGGGCAAGTTAA 567 0.5503 MQLQRRVLETGLSISPSSSSSSSSSIINEANFDTNMVIILAALMCALVCALGLNSIARCALRCGRRLTAEQEAERLATTGLKKSHLRRIPVAVYGSGENIPATECPICLGEFERGDKVRMLPQCNHGFHVKCIDTWLVSHSSCPNCRHSLLEKPKVNNSGSASSGGGDGGGGGGGGGGNMVIVLDRAS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02434 188 MobiDBLite consensus disorder prediction 1 25 - -
Aip04g02434 188 PANTHER RING-H2 FINGER PROTEIN ATL74 4 160 - -
Aip04g02434 188 SMART ring_2 105 146 IPR001841 -
Aip04g02434 188 CDD RING-H2_PA-TM-RING 104 147 - -
Aip04g02434 188 Pfam Ring finger domain 104 147 IPR001841 -
Aip04g02434 188 SUPERFAMILY RING/U-box 91 156 - -
Aip04g02434 188 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 4 160 - -
Aip04g02434 188 MobiDBLite consensus disorder prediction 157 178 - -
Aip04g02434 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 152 IPR013083 -
Aip04g02434 188 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02434 Aip-Chr4 110059739 110060305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02434 6 154 C3H Transcription Factor Family AT3G10910 55.556 3.30e-56 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02434 K19040 - vvi:100243283 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02434 04 110059739 110060305 Aip04g02434 04 110059739 110060305 ECH