Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02429 ATGAGTTTCAGAGAAGAATCGGTTCCGGAAAGCACTGAGTCAAAATCAGTGAAGCAAAATGGGTTCATAACAGATACTCAGTTAACAATCGATGAGAGCCTTTTGGTTGATCCAAAACTTCTGTTTATAGGGTCCAATATTGGTGAGGGAGCTCATGGTAAAGTCTATGAAGGAAGGTATGGAGAGAGAATTGTTGCAATCAAAGTTTTAAATCGTGGGAGCACTTCTGAAGAAAGAGCTGCCCTTGAAAATCGGTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTTGTTAAGTTTATTGGAGCTTGTAAGGATCCTTTGATGGTGATCGTTACAGAATTATTGCCTGGGATGTCACTGAGGAAATACTTAACAAGTATCCGTCCGAAGTTACTAGACCTTCATGTTGCTATAAACTTTGCCCTTGATATTGCTCGGGCCATGGATTGGCTACATGCCAACGGGATCATACATAGAGATCTGAAGCCCGACAATCTGTTGCTTACGGCAAATCAGAAGTCTGTTAAACTTGCAGATTTTGGTCTCGCAAGAGAAGAATCCGTGACTGAAATGATGACAGCAGAAACCGGAACTTACCGATGGATGGCACCAGAGTTGTATAGTACCGTGACATTGCGCCAGGGAGAGAAAAAGCACTACAACAACAAGGTTGATGTGTATAGCTTTGGTATTGTTTTGTGGGAGCTACTAACAAACCGCATGCCTTTCGAAGGGATGTCGAATTTACAGGCTGCTTATGCTGCTGCATTTAAGGTTGCAGCAAGAGAGGCCTAG 810 0.4296 MSFREESVPESTESKSVKQNGFITDTQLTIDESLLVDPKLLFIGSNIGEGAHGKVYEGRYGERIVAIKVLNRGSTSEERAALENRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTELLPGMSLRKYLTSIRPKLLDLHVAINFALDIARAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKVAAREA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02429 269 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Aip04g02429 269 PANTHER SERINE-THREONINE PROTEIN KINASE 9 263 - -
Aip04g02429 269 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 9 263 - -
Aip04g02429 269 Gene3D Phosphorylase Kinase; domain 1 29 120 - -
Aip04g02429 269 ProSitePatterns Protein kinases ATP-binding region signature. 47 68 IPR017441 GO:0005524
Aip04g02429 269 Gene3D Transferase(Phosphotransferase) domain 1 122 269 - -
Aip04g02429 269 PIRSF ILK 12 265 - -
Aip04g02429 269 Pfam Protein kinase domain 45 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02429 269 ProSiteProfiles Protein kinase domain profile. 41 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02429 269 CDD STKc_MAP3K-like 47 255 - -
Aip04g02429 269 SMART serkin_6 41 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02429 269 SUPERFAMILY Protein kinase-like (PK-like) 30 258 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02429 Aip-Chr4 109895533 109899527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02429 29 263 MAP Kinase Kinase Kinase AT5G01850 79.923 3.63e-150 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Aip04g02429 Pkinase 2.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02429 - - pvu:PHAVU_008G083700g 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02429 04 109895533 109899527 Aip04g02429 04 109895533 109899527 ECH