Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02406 ATGAGATTGGGTGTTCAATCCACTGCCGACGTCTATTTTTCGCTCATGTGCCGGTCACCGGAAATCTCAATAGTTGTTCAATGCCAGAACATGAACTTTGTGAAGATGGTCTTACTAGAAATGGAACAAAAAGGAAGTGTGCTTATGCAGCGATACGAACTAGGGAAGTTATTAGGCCAAGGGACCTTTGCAAAGGTCTACCATGCTAGGAACCTTGCAACTGGCATGAGTGTGGCCATTAAGGTAATTGACAAAGAGAAGATATTGAAAGTTGGGATGATTGAACAGATTAAGCGTGAAATTTCGGTGATGAGACTAATTCAGCATCCGCATGTGGTGGAGCTTTATGAGGTAATGGCCAGTAAAACCAAAATCTACTTCGTCATGGAGTATGCAAAAGGGGGTGAGCTCTTCAACAAGATACTTAAAGGAAAACTCAAAGAGGATGTTGCCAGGAGATACTTTCAGCAACTGATTAGTGCAGTCGACTATTGTCACAGCCGGGGGGTGTGCCATCGAGATTTGAAACCAGAAAATCTACTATTGGATGAAAATGAGAATTTGAAGGTTTCAGACTTTGGATTGAGTGCTCTTGCTGAATCGAAGCACCAAGATGGATTACTCCATACAACATGTGGTACGCCGGCCTATGTTGCGCCAGAAGTGATAAACAGAAGGGGTTATGATGGGGTGAAAGCTGATATATGGTCCTGCGGGGTAGTCTTGTTTGCTCTGTTGGCTGGTTATCTTCCATTTCAGGATAAAAATCTGATGGAGATGTATAGGAAAATCGGTAAGGCGGAATTCAAATTTCCTAAGTGGTTTGCACCTGATGTTCGCCGATTGTTGTCCAAAATCTTGGATCCAAACCCAAGGACAAGGATATCAATGGCCAAAATCATGGAAAGTTCTTGGTTTAAAAAGGGGTTAGACAAGTCTGTGATTACTGCAACTGAAAACAAAGAGCTAGCCCCTCTGGATGCCGAAGATGTTTTCGACACATGCGAGAACTGTCCAATTGCAAAGCCCAAGAAAGAGCAGGGAAAACCTTTCAATTTAAATGCCTTTGACATAATCTCTTTCTCCTCCGGCTTTGACTTATCCGGTTTGTTTGAGGATACTGAGCAAAAGAAAGAGGTCCGGTTCACATCTAACAAGTCCGCCTCGACCATATTCTCTAAGTTGGAAGACATTTGCAAGCGCTTTCGGTTAAAAGTGAAGAAGAAAGACGGAGGTTTGTTGAAGTTAGAAGGTTCCAAGGAAGGCAGAAAAGGGATCTTGGGCATTGCTGCTGAGATTTTCGAGATAACCCCACAGTTCCATCTGGTAGAGTTGAGAAAGGTCAATGGTGACACAGTGGAGTACAAGAAGCTTCTGAAACATGACATTCGGCCGGCACTCAAGGACATTGTTTGGTCATGGCAGGGAGAACAACCACCACAGCATGAAGTGGTGCCGGAAGAGCAACAACAGCAGTCTCATGTTGTGCCTAGTTATTAG 1500 0.438 MRLGVQSTADVYFSLMCRSPEISIVVQCQNMNFVKMVLLEMEQKGSVLMQRYELGKLLGQGTFAKVYHARNLATGMSVAIKVIDKEKILKVGMIEQIKREISVMRLIQHPHVVELYEVMASKTKIYFVMEYAKGGELFNKILKGKLKEDVARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDENENLKVSDFGLSALAESKHQDGLLHTTCGTPAYVAPEVINRRGYDGVKADIWSCGVVLFALLAGYLPFQDKNLMEMYRKIGKAEFKFPKWFAPDVRRLLSKILDPNPRTRISMAKIMESSWFKKGLDKSVITATENKELAPLDAEDVFDTCENCPIAKPKKEQGKPFNLNAFDIISFSSGFDLSGLFEDTEQKKEVRFTSNKSASTIFSKLEDICKRFRLKVKKKDGGLLKLEGSKEGRKGILGIAAEIFEITPQFHLVELRKVNGDTVEYKKLLKHDIRPALKDIVWSWQGEQPPQHEVVPEEQQQQSHVVPSY 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02406 499 ProSiteProfiles Protein kinase domain profile. 52 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02406 499 Pfam Protein kinase domain 52 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02406 499 ProSiteProfiles NAF domain profile. 348 372 IPR018451 GO:0007165
Aip04g02406 499 PANTHER - 42 481 - -
Aip04g02406 499 SUPERFAMILY Protein kinase-like (PK-like) 48 319 IPR011009 -
Aip04g02406 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Aip04g02406 499 CDD STKc_SnRK3 51 305 - -
Aip04g02406 499 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 42 481 - -
Aip04g02406 499 Gene3D Transferase(Phosphotransferase) domain 1 43 350 - -
Aip04g02406 499 Gene3D Kinase associated domain 1, KA1 351 473 - -
Aip04g02406 499 SMART serkin_6 52 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02406 499 CDD CIPK_C 354 468 - -
Aip04g02406 499 Pfam NAF domain 351 408 IPR004041 GO:0007165
Aip04g02406 499 ProSitePatterns Protein kinases ATP-binding region signature. 58 81 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02406 Aip-Chr4 109250925 109252516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02406 41 478 CBL-interacting serine-threonine protein kinases AT5G58380 66.150 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Aip04g02406 Pkinase 1.8e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02406 K07198 - gmx:100811923 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02406 04 109250925 109252516 Aip07g01272 07 20310105 20312676 ECH
Aip04g02406 04 109250925 109252516 Aip10g01385 10 23450092 23451423 ECH
Aip04g02406 04 109250925 109252516 Aip04g02406 04 109250925 109252516 ECH
Aip04g02406 04 109250925 109252516 Aip01g00280 01 2987464 2988849 ECH