Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02395 ATGCCACTGTCACTCCGTTTGCTCACGCCGCCGCGTGCTCTGTTGCTGCCGTGCCGCTGTTGCTCCCCACTGTTGCTCCTCTTGCTTGCGCCGCCGCTGCTCCTTCTCTCTGTTGCTGCCGTCGCTCCTCCTACTTTGGTCCTTTTCCGCTCTCTCTCAATCAAGCTCACAAGAACCAGGAACAAGAAAATTGGAGTTGAAAAGTGTAGCAGTGCTAGTTGTTCCAATAGTCAGTTCAGTGGTTGCTCTGGTGGTTGGAATTGTTATTGGGATTTATATCTGGAAACACAGATACATTCAAAAGAAAAGAAGAGGAAACTGAGGAACAATGAATTGAACAATACATTAGACTTAGTAGCTTTAGTCAGAAGGGTGCTGCTGTCAATATGTTCATTGCTAACAGGTCCTGCTGTCAATATGGCATATATGATGGATGGTGATGATGAGTATATTCAAGCATCTAAAGGGAAGAATGTTGAAAGTTTCACATGTTCAGAAGTAGCACTACCACAGAACAAAAATGCTAAGAAGAAAAAGAGTAAGATAGAGAACAAGAGAAGGTTCAGTGATGAGCAAATTAGATCACTTGAGTGCATATTTGAGTCAGAGTCCAAGCTTGAGCCAAAGAAGAAGATTCAGCTAGCAAGAGATCTTGGATTGCAGCCAAGGCAAGGTTTTATATGGTTTCAGAACAGATGGGCAAGATCACTTTTCCTTTTAATGGTCCTTTATAGAAAGCATATGGACTTGCCTCCTGAATTTGACAGATCACAAGATATGGTTGGTAGAGATGGAGATCGCAGCCGTGGCCGAGGCCGAGGCCGAAAGGGGAGCCTCAGATTCACATGA 849 0.4441 MPLSLRLLTPPRALLLPCRCCSPLLLLLLAPPLLLLSVAAVAPPTLVLFRSLSIKLTRTRNKKIGVEKCSSASCSNSQFSGCSGGWNCYWDLYLETQIHSKEKKRKLRNNELNNTLDLVALVRRVLLSICSLLTGPAVNMAYMMDGDDEYIQASKGKNVESFTCSEVALPQNKNAKKKKSKIENKRRFSDEQIRSLECIFESESKLEPKKKIQLARDLGLQPRQGFIWFQNRWARSLFLLMVLYRKHMDLPPEFDRSQDMVGRDGDRSRGRGRGRKGSLRFT 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02395 282 Gene3D - 165 237 - -
Aip04g02395 282 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 147 235 - -
Aip04g02395 282 MobiDBLite consensus disorder prediction 254 272 - -
Aip04g02395 282 Coils Coil 172 192 - -
Aip04g02395 282 Pfam Homeodomain 185 235 IPR001356 GO:0003677
Aip04g02395 282 ProSiteProfiles 'Homeobox' domain profile. 179 235 IPR001356 GO:0003677
Aip04g02395 282 SUPERFAMILY Homeodomain-like 175 235 IPR009057 -
Aip04g02395 282 SMART HOX_1 182 243 IPR001356 GO:0003677
Aip04g02395 282 CDD homeodomain 185 232 IPR001356 GO:0003677
Aip04g02395 282 MobiDBLite consensus disorder prediction 254 282 - -
Aip04g02395 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 147 235 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02395 Aip-Chr4 108909088 108913274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02395 173 235 Homeobox Transcription Factor Family AT2G46680 66.667 5.89e-21 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Aip04g02395 Homeodomain 4.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02395 K09338 - aip:107619340 197.593