Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02390 ATGGCTTCTAGTAGGGAGAGAAGAAGGGAGGCTCTTCAACAAAAGTTGAATCAACTCCGAGATGTTACAAATTCTAGTGGTGTGAACAAAGCTTCAATTATTGTGGACGCATCCAGATACATAGAGGAGTTGAAGCAAAAAGTGGAGGGACTGAATTCCGAGCTTGTAATCCCTGAAACTTCTTCGTCAACCTCTCAAATTGATGATGAACTACCTATGGTGACAGTGGAAACCCTAGAAAAAGGTTTCCACATTAACGTGTATTCAGAGAAGAATTGCCCTGGTATGTTGGTCTCAATACTAAAAGCATTTGAAGAGCTTGGACTTGATGTTCTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTTCAAGCAGTGGGTGGAGAAAGTCAAAAGAACAATGATACTATTGACGCACAAGTGGTGAAGCAAGCAGTGATGCAAGCAATCAACAAAAAGGAGGTGTCTGTAGAGAACTGGAACCAACTTGACCAAGAATATGTCTTTATTTATGTCAATCCAAAAAATGTTTCAAATAAAGTGCTGGTAAAGTACCTCGTCATGAATGAGAAGTTACTCATTGATGCCTTGAAGGAAGGGTCTTCTGACCCTGCACACCTTGAGATTTGTGTTAGGGATTATACTATAGCAAATGAAAGCAGCAGTTATTCTGAGCAGaacgctgtggggaagacaagaacagagaaacgaagagaagagaagacagagcgttTTACCATGTACAAAAAAATCCCCAATCCTACTTGGATCCACCGAAGTAATGGTCAGAAGCACCAAAAAGGGCAGTGGCTCATCAACCTGGGCACATTGAGAAGGAAGATGGAGGCCTTCTCATTAGAACAACTCAGGTCTAAGTTCACGGTGAAACTTGGAGACACCTCTGACAGGAACAACTTTGTGTGGTCATTGAGGCGAGGAACTAGCAACTGTAGGCGGTGGAGATTCAGCCGCCATTGA 981 0.4006 MASSRERRREALQQKLNQLRDVTNSSGVNKASIIVDASRYIEELKQKVEGLNSELVIPETSSSTSQIDDELPMVTVETLEKGFHINVYSEKNCPGMLVSILKAFEELGLDVLDARVSCEDTFQLQAVGGESQKNNDTIDAQVVKQAVMQAINKKEVSVENWNQLDQEYVFIYVNPKNVSNKVLVKYLVMNEKLLIDALKEGSSDPAHLEICVRDYTIANESSSYSEQNAVGKTRTEKRREEKTERFTMYKKIPNPTWIHRSNGQKHQKGQWLINLGTLRRKMEAFSLEQLRSKFTVKLGDTSDRNNFVWSLRRGTSNCRRWRFSRH 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02390 326 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 154 - -
Aip04g02390 326 Gene3D - 116 242 - -
Aip04g02390 326 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 154 - -
Aip04g02390 326 CDD ACT_UUR-ACR-like 85 151 - -
Aip04g02390 326 Pfam PI31 proteasome regulator N-terminal 154 244 IPR021625 -
Aip04g02390 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 55 IPR036638 GO:0046983
Aip04g02390 326 Coils Coil 34 54 - -
Aip04g02390 326 Coils Coil 2 22 - -
Aip04g02390 326 Gene3D - 3 64 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02390 Aip-Chr4 108732574 108740780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02390 7 124 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 31.333 4.07e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02390 - - gmx:100527466 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02390 04 108732574 108740780 Aip07g01301 07 20930371 20931604 ECH
Aip04g02390 04 108732574 108740780 Aip10g01396 10 23749632 23752410 ECH
Aip04g02390 04 108732574 108740780 Aip04g02390 04 108732574 108740780 ECH
Aip04g02390 04 108732574 108740780 Aip01g00293 01 3123992 3127293 ECH