Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02382 ATGGGAATTGAGAGAAGGAAGAAGAGTAGTAATGGATCTGTGTGGTCTATTTTCATGCATGCGGATACCCAAGACTGGCTTCTAATGGGTTTTGGTGTGTTAGGGGCCATTGGTGAAGGTTCCACCACTCCTCTTGTGCTCTATCTCAGTAGCCTCATTATGAACAATATTGGGACTTCTTCTACCATCTCATCAACCACTTTTGTCCATTGCATCAACAAGAATGCAGTGGCTTGGTTATATTTGGCTGCTGGAACATTCCTTGTTTGCTTCCTCGAGGGTTATTGTTGGACAAGAACAAGTGAGAGACAAGCAGCAAGAATGAGAGCAAAGTACCTGAAAGCAGTGATGAGACAAGAAGTTGCATATTTTGATTTGAATGTGACAAGTACCTCAGACATAATCACTGGCGTTTCCAATGATAGCCTCCTCATTCAGGATGTTATTAGTGAGAAGGTACCAAATTTGTTGATGAACTTTTCATTGTTCATTGGGAGCTACATAGCTGGTTTTGCAATGCTATGGAGATTGGCCATAGTAGGGATCCCATTCACAATTCTTCTTGTAATCCCTGGCTTCATTTATGGCAAGACATTAATGGGATTAGCAAAGAAAATGAGAGAAGAGTATAATAAAGCAGGTGCAATAGCTGAACAAGCAATATGTTCAATAAGAACAGTGTATTCATATGTGGGAGAAAATAAGACCATAAATGCATTCTCTAATTCTCTTCAAGGGTCACTGAGTTTGGGACTCAAACAAGGGTTGGCTAAAGGTTTAGCCATTGGAAGCAATAATGGTATTGTTTTTGGTATATGGTCTTTTTTGTGTTATTATGGTAGCAGATTGGTCATGGACCATGGTGCTAAAGGAGGCACAGTTTTTTCAGCTGGAGCAGCTATCACTGTTGGTGGATTGGCACTAGGTGCTGGTTTAACCAACATGAAATACCTGAGCGAAGCAAGTTCAGCAGCGGAACGCATAAGGGAAGTCAATGAGAGAGTTCCGATGATCGATTCCGACGACAGTGACGGCAAAATCCTGGGAAGCGTTCGAGGGGAAGTAGAATTCCGAAACGTAGAGTTCGCGTACCCGTCGAGACCAGAGACCGTTATTTTGAAGGGTTTGTGGCTCAAGATTCCGGCAGGGAANNNNNNNNNGCAGCGGTTTTACGACCCTCTTGGTGGCGAAATAAGGTTTGATGGTGTTGCCATTAATAAGTTGCAGCTCAAGTGGTTCAGATCACAGATGGGGTTAGTGAGTCAAGAGCCCGCATTGTTTGCCACCAGCATCAAAGAGAACATCCTGTTTGGGAAGGAAGATGCAACAGAAGCTGAGGTCATTGAGGCTGCAAAAGCTTCCAATGCTCATCATTTTATTTCCATGCTGCCTCAGGGTTATCAAACCCAGGTAGTGGGTGAGAGAGGAACTCAAATGTCAGGTGGACAAAAGCAGAGGATTGCAATTGCTAGGGCAATAATTAAGAAGCCAAGAATGCTTCTTCTGGACGAAGCAACCAGTGCACTAGACTCCCACTCAGAGCGAATTGTCCAAAAAGCCCTCGAACAAGTGTCTGTTGGCTGCACCACCATCGTCGTCGCCCACCGCCTGTCCACGATTCGCAATGCCGACGTCATCGTCGCCATGCGAGCCGGAAAGGTGGTGGAGATGGGCACTCACGACGACCTCCTCTTGAGTCATGATGGACTCTACTCCTCCATGGTTCGTCTCCAACAAACTGAGAAATCAGAAACAGATGAATCTGTAACTGCCCCAACAACTGCTATTCATGTTCCTTCTTCTATGTCGGCTAGTGACACTGTTGATATTCACCACCTATATGATGACGACAACATTAAAAAGTTGGAAGAAGAGAAAGAGGAGAATAAGAACGCTCAGACGACGACGTCGTTCTGGAGGCTGCTGGCACTGAACCTTCCGGAGTGGAAGCAAGCAGTTATGGGTTGCTTGAATGCGATGGTGTTCGGTGCAGTTCAACCGGTGTACACTTTGATTATGGGGTCGATGATGTTTGTGTATTTCGACAGCGATGATGAAGAGATGAGGAGGAAGACGAAGGAGTACTCGGTTTGCTTTGTGGGACTGTTTGTGTTGTCTTTGATTGTGAACATTGGGCAGCATTATAGCTTTGCATATATGGGAGAGTGCTTGACCAAAAGAATTAGAGAGACTATGTTTAAAAAGATACTCACCTTTGAAGTCTCCTGGTTTGATCGTCATGAAAATTCTACCGGTGCTATTTGCTCTAGGCTTGCCAACGATGCAAATGTGGTGAGGTCTTTAGTGGGAGATAGGATTGGTTTGGTGGTGCAGACAGTGTCAGCGGTAGTAACAGCTTGGACTTTGGGTTTGGTCATTGCATGGAGACTGGCTATTGTTATGATATGTGTTCAACCCCTTATGATTGCATGCTTCTATACAAAACGTGTCCTTATCAAGACTATGTCAAAAAAGGTTGCAAAGGCGCAAGAAGAAAGTAGCAAGGTTGCCGCTGAAGCCGTTTCAAACCTAAGAACTATCACAGCCTTCTCTTCTCAAAACCGAATCCTCAAAATGCTCGAAAATGCACAAGAAGGACCAAGACGCGAGAATATCCGGCAATCATTTTACGCCGGAATCGGCCTTGCATGTTCCCAAGGCATAACATCATGTGTTTGGGCTCTCAACTATTGGTACGGTGGCAAGCTCGTCGCCGACGGTTACATCACCACAAAGGCATTGTTTCAAAGCTTCATGATTATTGTGAGTACAGCAAGAGTCATTGCCGACGCCGGCAGCATGACCTCGGACCTCGCAAAAGGCGCTGACGCCGTGTGCTCCATTTTCGCCGTCTTAGACCGGACCACCAAGATAGCGGCCGACGACGAAAATGGTCACAACCCGGAACATGTAACAGGACAAATACAACTCCATGATGTGCATTTTGCTTACCCCACTAGGCCAAACGTGACTATCTTCAAATCCTTTTCAATGAAAATAGAAGCTGGAAAGTCAACGGCATTGATAGGTCAAAGTGGATCCGGAAAGTCAACGATTATAGGGCTAATTGCAAGGTTCTATGATCCGCTAAGAGGGTACGTGACAATTGATAATAGAGATGTAAAGTCCTATAATTTGAAACAATTAAGGAGGCACATTGCACTTGTGAGCCAAGAACCTACGTTGTTCAATGGGAGCATAAGAGAGAACATTGCTTATGGATCTAATAACGGTGATGATGATAATGAAGTTGATGAGTCAGAGATCATAGAAGCGTCAAAATTAGCCATGGCACATGATTTTATTACCGGATTGAAGGACGGTTATGACACATGGTGTGGTGAGAAGGGGTTACAGCTTTCAGGGGGTCAAAAGCAAAGGATAGCGATTGCAAGGGCTATATTGAAAAATCCAAGAGTGTTGTTATTGGATGAGGCAACTAGTGCCCTTGATATTCAATCGGAGAAAGTTGTTCAGGAAGCACTAGAGAGGGCTATGGTGGAGAGGACTAGCGTGATCGTCGCACATAGGATGTGTACCATAAAGAAATGTGATCTTATTGCTGTGTTGGAGAAGGGCATGGTTGTGGAAAGTGGGACCCACTCTTCTTTGTTGGCAAAAGGAACTGCTGGAGCTTATTGCAACTTTGTTAGGCTTCAGACTGGAACTAACTAG 3675 0.4468 MGIERRKKSSNGSVWSIFMHADTQDWLLMGFGVLGAIGEGSTTPLVLYLSSLIMNNIGTSSTISSTTFVHCINKNAVAWLYLAAGTFLVCFLEGYCWTRTSERQAARMRAKYLKAVMRQEVAYFDLNVTSTSDIITGVSNDSLLIQDVISEKVPNLLMNFSLFIGSYIAGFAMLWRLAIVGIPFTILLVIPGFIYGKTLMGLAKKMREEYNKAGAIAEQAICSIRTVYSYVGENKTINAFSNSLQGSLSLGLKQGLAKGLAIGSNNGIVFGIWSFLCYYGSRLVMDHGAKGGTVFSAGAAITVGGLALGAGLTNMKYLSEASSAAERIREVNERVPMIDSDDSDGKILGSVRGEVEFRNVEFAYPSRPETVILKGLWLKIPAGXXXXQRFYDPLGGEIRFDGVAINKLQLKWFRSQMGLVSQEPALFATSIKENILFGKEDATEAEVIEAAKASNAHHFISMLPQGYQTQVVGERGTQMSGGQKQRIAIARAIIKKPRMLLLDEATSALDSHSERIVQKALEQVSVGCTTIVVAHRLSTIRNADVIVAMRAGKVVEMGTHDDLLLSHDGLYSSMVRLQQTEKSETDESVTAPTTAIHVPSSMSASDTVDIHHLYDDDNIKKLEEEKEENKNAQTTTSFWRLLALNLPEWKQAVMGCLNAMVFGAVQPVYTLIMGSMMFVYFDSDDEEMRRKTKEYSVCFVGLFVLSLIVNIGQHYSFAYMGECLTKRIRETMFKKILTFEVSWFDRHENSTGAICSRLANDANVVRSLVGDRIGLVVQTVSAVVTAWTLGLVIAWRLAIVMICVQPLMIACFYTKRVLIKTMSKKVAKAQEESSKVAAEAVSNLRTITAFSSQNRILKMLENAQEGPRRENIRQSFYAGIGLACSQGITSCVWALNYWYGGKLVADGYITTKALFQSFMIIVSTARVIADAGSMTSDLAKGADAVCSIFAVLDRTTKIAADDENGHNPEHVTGQIQLHDVHFAYPTRPNVTIFKSFSMKIEAGKSTALIGQSGSGKSTIIGLIARFYDPLRGYVTIDNRDVKSYNLKQLRRHIALVSQEPTLFNGSIRENIAYGSNNGDDDNEVDESEIIEASKLAMAHDFITGLKDGYDTWCGEKGLQLSGGQKQRIAIARAILKNPRVLLLDEATSALDIQSEKVVQEALERAMVERTSVIVAHRMCTIKKCDLIAVLEKGMVVESGTHSSLLAKGTAGAYCNFVRLQTGTN 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02382 1224 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 355 576 IPR003439 GO:0005524
Aip04g02382 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 964 1220 IPR027417 -
Aip04g02382 1224 SMART AAA_5 191 561 IPR003593 -
Aip04g02382 1224 SMART AAA_5 1002 1200 IPR003593 -
Aip04g02382 1224 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 975 1217 IPR003439 GO:0005524
Aip04g02382 1224 Gene3D ABC transporter type 1, transmembrane domain 16 944 IPR036640 GO:0005524|GO:0016021
Aip04g02382 1224 ProSitePatterns ABC transporters family signature. 479 493 IPR017871 GO:0005524
Aip04g02382 1224 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 31 320 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip04g02382 1224 CDD ABC_MTABC3_MDL1_MDL2 975 1220 - -
Aip04g02382 1224 Pfam ABC transporter 994 1148 IPR003439 GO:0005524
Aip04g02382 1224 SUPERFAMILY ABC transporter transmembrane region 640 954 IPR036640 GO:0005524|GO:0016021
Aip04g02382 1224 ProSitePatterns ABC transporters family signature. 1120 1134 IPR017871 GO:0005524
Aip04g02382 1224 Gene3D - 965 1223 IPR027417 -
Aip04g02382 1224 SUPERFAMILY ABC transporter transmembrane region 23 339 IPR036640 GO:0005524|GO:0016021
Aip04g02382 1224 CDD ABC_6TM_Pgp_ABCB1_D2_like 642 958 - -
Aip04g02382 1224 Pfam ABC transporter 389 507 IPR003439 GO:0005524
Aip04g02382 1224 CDD ABC_MTABC3_MDL1_MDL2 355 578 - -
Aip04g02382 1224 Gene3D - 345 579 IPR027417 -
Aip04g02382 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 345 578 IPR027417 -
Aip04g02382 1224 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 659 940 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip04g02382 1224 CDD ABC_6TM_Pgp_ABCB1_D1_like 29 328 - -
Aip04g02382 1224 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 18 1222 - -
Aip04g02382 1224 Pfam ABC transporter transmembrane region 655 924 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip04g02382 1224 Pfam ABC transporter transmembrane region 30 301 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip04g02382 1224 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 18 1222 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02382 Aip-Chr4 108392568 108402097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02382 17 1224 Calmodulin-binding Proteins AT2G36910 40.096 0.0 939
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02382 K05658 - gmx:100807709 1616.67