Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02376 ATGCTACCTAGGACAAGTATTGATGGTTTTCGTGTTAGTGTGTCAAGTACACCTAGCTGTTCAAGTGGGGGATCGGGACCAGAGGACATCGAGTCTCTAGGTGATCTTTATATATGGGGACAAATTTGGGCAGATGTTTCACCTGATAGTTTTGGGACTCAGCTCCCTCCCATGACTGATGTTTTGCTTCCTAAACCGTTAGAGGCAAATATTGTTCTTGATGTTCAACAGATTGCATCTGGTGTCCACCACATTGCTTTAGTTACAAGGCAAGGTGAAGTTTTCACTTGGGGAGAGGAATCTGGGGGAAGACTTGGTCATGGAATCGATAAAGATTTTGGTCAACCCCATCTTGTTGAGTTCTTGGCAGTTACTAATGTGGATTATGTTGCATGTGGAGAGAACCATACATGTGCTCTGACTACATCAGATGAGCTATATTCTTGGGGTGATGGTGCATATAATGTTGGACTTCTTGGCCATGGTTCGGATTCTAGCCATTGGATACCAAAGAGAGTTAGTGGCCCTCTAGAAGGACATCAAGTTATATCTGTTGCGTGTGGCACATGGCATTCGGCATTGGCAACTGCCAATGGAAAACTTTTTACGTTCGGTGATGGAACATTTGGTGTCTTAGGTCATGGAGATAGAGAGAGTGTGTTATATCCAAAGGAAGTGCAGTTATTAAGTGGATTGAGGACACTTAAAGTTGCATGTGGAGTATGGCACACTGCAGCTATTGTAGAGGTAACACTTCAGTCTAGTTCAAATGTTTCATCAAGGAAGCTCTTTACTTGGGGTGATGGTGATAAGTATCGTTTGGGGCATGGAAACAAGGAAACATACCTTCAACCGACTTGTGTCTCATCTCTTATAGAATTAAATTTCCACCAGATAGCATGTGGAAACACTATGACTGTTGCCCTCACTACATCGGGTCATATTTTCACTATGGGAGGCACTGAACATGGTCAACTAGGAAATCCTTTGTCCGATGGAAAAGTACCAATGCTAGTACAAGATAAGTTGGTAGGTGAGTATGTTGAGGAAATATCATGTGGATCTCATCATGTGGCTGTATTGACATCAAGAAGTGAACTATATACATGGGGGAAAGGTGCCAATGGAAGATTGGGACATGGAGACACAGAAGATAGGAAGGGTCCAACAATAGTGGAAGCCTTGAAAGAAAGGCATGTAAAAAACATTTCGTGTGGGTCGAAGTTTACAACTTGCATATGCATCCATAAATGGGTCTCAGGAGTTGACCAATCTAGTTGTACTGCATGTAGGCAACCATTTGGATTTACTAGAAAAAGGCACAATTGTTATAATTGTGGGTTAGTGCATTGCCATGGTTGTAGTTCAAAAAAGGCATTGAGGGCAGCGTTGGCTCCAACACCCGGAAAACCTCATCGTGTGTGTGATTCTTGTTATACTAAGATTAAAAATGTTGAGTCGAATTCTGGTGCCATTTTTAATAGGAGAGCTACTACTCCACCTCGTACTTCTATAGATGGAAGGGAAAGATTTACCCTGGGAGAAATAAGATCTTCAAGAACTCTCTTCCCTCTCTCAAGGATTCACAAGACTACTACAGAGCAAGTTGTTCAGGTTCCATCACTAGTGCAATTGAAAGATGTTGCATTCCCAAGTTCAACAGGTTCAATAATGCAAAATCTTTTGAAGCCTACCATCGCTGCCATACCTCCAACTCCAAGTCCACCACCAACTCCACCACTCATTTCAAGGCCCGCATCCCCGTATGCAAGAAGGCCAAGCCCTACGCGTTCCGGCACTGGTGGATTCTCTAGAAGTCTTATTGATAGTTTGAGGAAAACAAATGAGCTTAAGAATCAAGAAGTGTCAAAATTGCAGAAACAAATTCAAAGTTTGAAACAGAAAAGTGACATGAAAGATGTGGAAAATCAAAAGCTTCGCCAACATATTAAGGAAGCTACAACATTGGCAGCAGATGAGTCTTCTAAGCATAAAGCAATGCTAGAAATTTTTGAGTGCACTATTATTCAGTTGAAGCAAATGGCTGAGAAGTTGCCACCAGAGATTTTAGAAACTGAAAATTTGAGAATTGCACTTACTCAAGCTGAAGATTTTCTGAAAGAAAACTCGACATCTGAAACATTTTCCGCGCCATCAATATCAGAGTCTACTCGACAAAATGCACCTGATCCTGCCACAGATATTGGGGATTCAAAAATGCAAGAGCACAATACAGAAGAAAATCATGAAACGGCGGCTTCGGACCCATCTCATGATGAGGGGAATGTCCTTCAAGAAAGAAATGGATCATCTGTATCCGATAATAGAACAGCAGTGCAACCACAAAGCTCCGAGGAGACGTCAAGGTTGGCAAGAGATGGAGAAACACAAGTTATTGAACAATTTGAGCCTGGTGTTTACGTGACACTAATAGTAAGGCCTAATGGTGTCAAAATTTTCAGGAGAGTTAGATTCAGCAAGCGAAGGTTTCATGAGCAACAAGCAGAAGAATGGTGGAACATAAATAAAGAGAGGGTGCTTCAAAGATATGGTCAACAAGCTAGAAGTGATGCTAATGCATCATCTAGCATCCCGGCACCACCTACTGAAGAAAATATTGAGGCAGCACCTACCTAA 2637 0.4198 MLPRTSIDGFRVSVSSTPSCSSGGSGPEDIESLGDLYIWGQIWADVSPDSFGTQLPPMTDVLLPKPLEANIVLDVQQIASGVHHIALVTRQGEVFTWGEESGGRLGHGIDKDFGQPHLVEFLAVTNVDYVACGENHTCALTTSDELYSWGDGAYNVGLLGHGSDSSHWIPKRVSGPLEGHQVISVACGTWHSALATANGKLFTFGDGTFGVLGHGDRESVLYPKEVQLLSGLRTLKVACGVWHTAAIVEVTLQSSSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSSLIELNFHQIACGNTMTVALTTSGHIFTMGGTEHGQLGNPLSDGKVPMLVQDKLVGEYVEEISCGSHHVAVLTSRSELYTWGKGANGRLGHGDTEDRKGPTIVEALKERHVKNISCGSKFTTCICIHKWVSGVDQSSCTACRQPFGFTRKRHNCYNCGLVHCHGCSSKKALRAALAPTPGKPHRVCDSCYTKIKNVESNSGAIFNRRATTPPRTSIDGRERFTLGEIRSSRTLFPLSRIHKTTTEQVVQVPSLVQLKDVAFPSSTGSIMQNLLKPTIAAIPPTPSPPPTPPLISRPASPYARRPSPTRSGTGGFSRSLIDSLRKTNELKNQEVSKLQKQIQSLKQKSDMKDVENQKLRQHIKEATTLAADESSKHKAMLEIFECTIIQLKQMAEKLPPEILETENLRIALTQAEDFLKENSTSETFSAPSISESTRQNAPDPATDIGDSKMQEHNTEENHETAASDPSHDEGNVLQERNGSSVSDNRTAVQPQSSEETSRLARDGETQVIEQFEPGVYVTLIVRPNGVKIFRRVRFSKRRFHEQQAEEWWNINKERVLQRYGQQARSDANASSSIPAPPTEENIEAAPT 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02376 878 MobiDBLite consensus disorder prediction 736 762 - -
Aip04g02376 878 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 78 88 IPR000408 -
Aip04g02376 878 MobiDBLite consensus disorder prediction 708 796 - -
Aip04g02376 878 Gene3D - 27 155 IPR009091 -
Aip04g02376 878 Pfam Regulator of chromosome condensation (RCC1) repeat 263 309 IPR000408 -
Aip04g02376 878 Pfam Regulator of chromosome condensation (RCC1) repeat 366 413 IPR000408 -
Aip04g02376 878 Pfam Regulator of chromosome condensation (RCC1) repeat 92 140 IPR000408 -
Aip04g02376 878 Pfam Regulator of chromosome condensation (RCC1) repeat 144 194 IPR000408 -
Aip04g02376 878 Pfam Regulator of chromosome condensation (RCC1) repeat 198 247 IPR000408 -
Aip04g02376 878 Pfam Regulator of chromosome condensation (RCC1) repeat 312 361 IPR000408 -
Aip04g02376 878 MobiDBLite consensus disorder prediction 850 868 - -
Aip04g02376 878 SUPERFAMILY RCC1/BLIP-II 33 418 IPR009091 -
Aip04g02376 878 Coils Coil 608 635 - -
Aip04g02376 878 Pfam Transcription factor regulating root and shoot growth via Pin3 796 850 IPR013591 -
Aip04g02376 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 419 492 IPR013083 -
Aip04g02376 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 199 250 IPR000408 -
Aip04g02376 878 MobiDBLite consensus disorder prediction 763 787 - -
Aip04g02376 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 365 416 IPR000408 -
Aip04g02376 878 MobiDBLite consensus disorder prediction 708 731 - -
Aip04g02376 878 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 237 247 IPR000408 -
Aip04g02376 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 92 143 IPR000408 -
Aip04g02376 878 SUPERFAMILY FYVE/PHD zinc finger 417 489 IPR011011 -
Aip04g02376 878 Pfam FYVE zinc finger 417 483 IPR000306 GO:0046872
Aip04g02376 878 ProSiteProfiles BRX domain profile. 796 851 IPR013591 -
Aip04g02376 878 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 3 850 - -
Aip04g02376 878 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 421 483 IPR017455 -
Aip04g02376 878 SMART fyve_4 415 484 IPR000306 GO:0046872
Aip04g02376 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 144 198 IPR000408 -
Aip04g02376 878 CDD FYVE_like_SF 426 479 - -
Aip04g02376 878 MobiDBLite consensus disorder prediction 568 586 - -
Aip04g02376 878 MobiDBLite consensus disorder prediction 850 878 - -
Aip04g02376 878 MobiDBLite consensus disorder prediction 568 605 - -
Aip04g02376 878 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 3 850 - -
Aip04g02376 878 PRINTS Chromosome condensation regulator RCC1 signature 74 87 IPR000408 -
Aip04g02376 878 PRINTS Chromosome condensation regulator RCC1 signature 144 160 IPR000408 -
Aip04g02376 878 PRINTS Chromosome condensation regulator RCC1 signature 185 201 IPR000408 -
Aip04g02376 878 PRINTS Chromosome condensation regulator RCC1 signature 201 215 IPR000408 -
Aip04g02376 878 PRINTS Chromosome condensation regulator RCC1 signature 302 320 IPR000408 -
Aip04g02376 878 PRINTS Chromosome condensation regulator RCC1 signature 360 381 IPR000408 -
Aip04g02376 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 313 364 IPR000408 -
Aip04g02376 878 Gene3D - 156 417 IPR009091 -
Aip04g02376 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 261 312 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02376 Aip-Chr4 108210527 108214039 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02376 757 853 Major Intrinsic Protein MIP AT1G31880 30.928 9.68e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02376 - - ahf:112742992 1720.29