Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02313 ATGGCATCCTCACACTCGGAAGCTGCAAAGATGGAACAAATTATAAGAGAGTTCTTTGCCAAAAGCATTCATATAATACTTGAATCAAGGGCTCTTTCTGTCTCCTCACGTAGTTCCTGTCTTGATCAAGCTATCTCCTCTCCATGTTCTTCATCTTCATCCTCCCCCAGTGTGCGCTCCAGGGATAAATGGTTCAATTTGGCTCTTCACGATTGCCCTGCCGCCATAGATAACATTGACCTCTCGCGCCGCAACAATCTTGACTTGATAGTCATTGATGTTATTTTAGTGCAAAAGCCTCTTGGCTGGGACCCCGTGAGTTTTTCCCCCAAAGGGGTTCTTCCTAGGAGTTCTTCCCTCAAGGAAAGATACCCTTTGAGCTGGAATACTGATCAGGAAGAATTGGGACTCGACGCAAACACTCAAAAGATTTTAGAGAGATGGGTGGTTCAGTATGAGAGCAGAAAAACAAGGGATTCTAGTTCTGGTAATAGGAGGTCAAGTAACGTTTCTTTGCGTGCCTTGTATAAGAAGTCAACTTTACTTCTAAGGTCCTTGTATGCCACAGTTAGACTTTTACCTGCTTATAAACTTTTCAGAGAGCTCAATTCGTCTGCACAGATTCGTCCCTTTACTCTTGCTCACCGGGTATCTTCCTTTTGTGAGCCCTTCACCCGTAAAGAGGAAGCTGAAATGATGAAATTTGGGTTTACCCCTGTGGATACTTATTCTGGTAGGCTGTGCCTTTCGGTGATGTATCGCCCATGCGCATCAGACTTGAGCTCTGAATCTTCAACTCGGTTATCCCCACAAGTTATAACTGACTATGTTGGCAGTCCACTGGCAGATCCATTGAGGAGGTACCCATCAGGATCGCCATCACATGGCTCTCTGTCGTCATTGCCATTTTCGAGGCAACATAGTTGGAGTCACAACCATTGTAGAACCTCGTCTCCTTCCATTACTTGTTCGCCTTCACCAACATATTCAGAATCGCACACGTCTGTATCTAATGCAAGTTCTAGGCGTTTACCACCTTCAAGTTTGCCCCCTCATCCAACTGAGATGTCCTTGATTCAGAAGAAGAGTTCAGGTTTTGATGAGTATTATCCCTCTCCATCACCTTCAATATACTATCCTGGGTCATTACCATCTAAAACGCTTTTACGATCTGAAAGTGCTCCAGTCAGCATACCTAATGCTGAAGCTGCAAATTTCCCTGGATACCACAACAGGCATAACTTGCCGTCAATTCCTCCACTTAGAGGTTTAAGGTGTGTTTCTAAGAATGATAGAGGTGTGAACACAATGCAAACAGGTGCAACAGCTGAGAAGTTATTTCCTCTTGGAAAAGATGAGCCCCGGAAATACTCTGGAATCAAGATATCAGCTTGCAGTTCGCCACAAATTTCAATTTCCAGAAGCTCAAGTAGGTCTTATCAGGATGATTTTGATGAAACTGATTTTACTTGCCCCTTTGATGTGGATGATGATGATCTGACAGATCCAGGCAGCAGGGCGGAATCATTTGATCATGGTCATATGGCTGAGGCATTTGAAGCTGGAGGATTCCTTCCCATCAGAAAGTCCCAGGATGCTGCTGTTGGTGCGCTTGTACGTATGCTGAAGAAAGCACCACCTCTCTGGCAAGATTTCTCTACTTCTGAACACTTGTCACACAGCACACACCCCGAAACCTGGAATGTTAACAACATTCAAGTTCTAGAAACAACAGTGCCAGCAAGCATGATGTCTTCTGGGCTCACAGCAACAAGGAAAACAACAAGTGATGCATTGGAAGAGTTTCATGGCTACAAAGAGATGAAAAACTTGTTGCTTACACCAGCCTCTTCCCAAACTACAGTTTTGGAGTTCAAGAAGGGAAATTATACATGCTCTATTATGCTTCTGCCTAACAAGGCCTGCATGGAGGGAGAATCCGCGGCAGACAAATGTTATCGGCCGTTGTCTGCTGAAGAAGAGGGAGGTGATGGAAGCGAGGCCTTTGGTCCTGGTGGCGACAAATTCAGTGACGAAGTTGAGGATGGGGAATTAGGGGTGGAGTCGGATGCACATGAGAATTTCAGGAACAGCTTCTTTGACAACTGGGAAGAGAGAGCAGTCGACGGTATTGCAGAGCTGGGGTGTATCAATTTCAAGGAAATAACTACAAAGGAGATTATGATGTGCCATTTTCCGGATCGATCGGTGGCATTCTTGTTTTACAGTTTGTATGCGAAGATGAATGGTTTCGCCGTGAGGAAGAATAAGATTTGGCGAAATGTGAGGAATGAGGTTACACAACAAGAATTTGTATGTTTCCGGCAGGAGTTCAGAGAAATGGGGTCTGTTAATGACGGCATGCGACGGAAACGTGAGCCAAAGGCAGAGACCAGATGCAGCTGTGAAGTAGAAATGCGCGTCCACGTGCACTCGGAAAGTGGTAGATGGATAATATCGTACTTTCAGGACATTCACAACCACGAGTTGCTAGACAATAGACTGACTTTCGCTACCGGGGCATAG 2526 0.4513 MASSHSEAAKMEQIIREFFAKSIHIILESRALSVSSRSSCLDQAISSPCSSSSSSPSVRSRDKWFNLALHDCPAAIDNIDLSRRNNLDLIVIDVILVQKPLGWDPVSFSPKGVLPRSSSLKERYPLSWNTDQEELGLDANTQKILERWVVQYESRKTRDSSSGNRRSSNVSLRALYKKSTLLLRSLYATVRLLPAYKLFRELNSSAQIRPFTLAHRVSSFCEPFTRKEEAEMMKFGFTPVDTYSGRLCLSVMYRPCASDLSSESSTRLSPQVITDYVGSPLADPLRRYPSGSPSHGSLSSLPFSRQHSWSHNHCRTSSPSITCSPSPTYSESHTSVSNASSRRLPPSSLPPHPTEMSLIQKKSSGFDEYYPSPSPSIYYPGSLPSKTLLRSESAPVSIPNAEAANFPGYHNRHNLPSIPPLRGLRCVSKNDRGVNTMQTGATAEKLFPLGKDEPRKYSGIKISACSSPQISISRSSSRSYQDDFDETDFTCPFDVDDDDLTDPGSRAESFDHGHMAEAFEAGGFLPIRKSQDAAVGALVRMLKKAPPLWQDFSTSEHLSHSTHPETWNVNNIQVLETTVPASMMSSGLTATRKTTSDALEEFHGYKEMKNLLLTPASSQTTVLEFKKGNYTCSIMLLPNKACMEGESAADKCYRPLSAEEEGGDGSEAFGPGGDKFSDEVEDGELGVESDAHENFRNSFFDNWEERAVDGIAELGCINFKEITTKEIMMCHFPDRSVAFLFYSLYAKMNGFAVRKNKIWRNVRNEVTQQEFVCFRQEFREMGSVNDGMRRKREPKAETRCSCEVEMRVHVHSESGRWIISYFQDIHNHELLDNRLTFATGA 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02313 841 MobiDBLite consensus disorder prediction 320 345 - -
Aip04g02313 841 Pfam FAR1 DNA-binding domain 741 831 IPR004330 -
Aip04g02313 841 MobiDBLite consensus disorder prediction 320 356 - -
Aip04g02313 841 PANTHER UNCHARACTERIZED 5 623 IPR040182 GO:0000045
Aip04g02313 841 Pfam Autophagy-related protein 13 15 256 IPR018731 GO:0006914|GO:1990316
Aip04g02313 841 Gene3D HORMA domain 1 259 IPR036570 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02313 Aip-Chr4 105884427 105889421 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip04g02313 ATG13 4.5e-36 CL0651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02313 K08331 - gmx:100798585 792.727