Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02280 ATGATAGAACGGCATGATAAAACCCAGATTGTTGATTCTCCGAGAGGTAGTAGGAGTGTGCTCAGCATCTGGATGGACAAGATGGGAGGATCGATCGTCACTCAGGTTCAGAGAGGGGAAAAAATCAATGGACCAACAACCATCCAGATTCAGAAAGCCAAGTACCTAGAGCTCGGAACTTTTCTCTTAAGGCTTCATAAGTCTGATTGTATCTACTATTTGAGGACTGGATTATGTGGCTATGGTTTCTGCTGCCGTTTCAATCATCCCCATGACCGTGCCGTGGACTGGAGGAGGGGAGTATTCAGAGCGAATTGGCCAGCCTTTGTGCTAGGCAAAACCAGCAAAGTTCAAGTTTTGATTGGATCTAAAAGATGGGTTACTAACAGTGGATATACTTCGCTTGATCACATAGTTTCTGGTTCTGATTAA 432 0.4444 MIERHDKTQIVDSPRGSRSVLSIWMDKMGGSIVTQVQRGEKINGPTTIQIQKAKYLELGTFLLRLHKSDCIYYLRTGLCGYGFCCRFNHPHDRAVDWRRGVFRANWPAFVLGKTSKVQVLIGSKRWVTNSGYTSLDHIVSGSD 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02280 143 SUPERFAMILY CCCH zinc finger 66 92 IPR036855 GO:0046872
Aip04g02280 143 ProSiteProfiles Zinc finger C3H1-type profile. 64 92 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02280 Aip-Chr4 104406445 104414416 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02280 60 94 C2H2 Transcription Factor Family AT5G18550 68.571 2.25e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip04g02280 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02280 - - ghi:107939653 62.7734