Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02278 ATGTCACGCATCCTCAACAACAACAAAAAGACTGAAACTATTCCTAGAATTTTGGTGTTTGCTGTAGAAATAGGAGATCGCGTAGGAGACGCACTGGAAGTAGAGAGTATTCTTGAGAAATGGAAGGAGTACAATAAGCAGCAACAACAACTCATAAGTGAAGGAGATGAGGTTGAAGTGATTCACAAAGTTCCTGCAAAGGGATCCAGAAAAGGGTGTATGAGAGGTAAAGGTGGACCACAGAATTATGATTATAAATTCAGGGGTGTGAGGCAGAGGATTTGGGGCAAATGGGTTGCAGAAATCCGCAAACCTATCAACAGCAAGCATGTTGGTGAAAAAGCAAACAGGCTTTGGCTTGGAACTTTTTCTACTGCACTTGAAGCTGCTTTTGCTTATGATGAAGCAGCAAGGACCATGTATGGCCCTGGCGCTCGTTTGAACTTTCCTCACCATTATGGCATAAAATCAATAGGTTCTAATGGATCATCTATTAGTACAGGATTTGATCAAAAATCACCAAGTGGAACCTATGTAGATATTTTGAACAGTGATAATGTTGCAAAAGTTGATTGGTTGGAGGGGAATCTCGGTATGGGTCTGGAAGAACAACTTAAGTTTTCTCAGGCAAACGAATTATTGGAGATGGAATGTGAGGGAGGAATTCTTCAAGAGCCTTTTAAGTATGGGATGACGGAGAAGAGTGAAGTGGAAAATTACAAATCTAGTAATGAGTTGAACTGCACAAACCATTGCTTTGGATATTTGCATAATATGATTCCAAACAGTAATCCAAAGTATGAGCAGTTCAATAATCTCAAATCTGAGGCAACTATTCCAACCAAAGATATGGAGGGAGTACTTGCAGAAATTCTGCAGTTTTACAGAACATGTTCCGAGATGAATAATGTTCAGTCACAAATTGATCAATTTACATATAAGCAATATATTGTTAGTGATTGCAAGAATGAAGCAGCCAATATAATAGGAGATTCAAAAAATCATTCTATGCAGAGAAGTAATTATCTAGTTACGAGTGGTACTTTTGGATCAATTGCAAATGTGTCAGAAAATGAGGATTTGAATATCAATAATACTAATAAGGACTCTACATTACAAGAGAAAAGAAATCATGAAAATTCAGAGTGCGGATGTAGCTCTGGGCAGAGTAGGAAGTGTTCTGATACTAGGTGTTCTGATACTTCGCAACAGTTGCAAAATTTGGGTGGTTACTTACCTGAACACTTGAATAATATACAGTTTGCAGACATGGAACTAATTGAGGAGGTGGTTGAGGAGGGAAGAGGAGAAGGTTTTGTCGGTGACGAAGTCGAAGGTGGACTTCGTGTTGAAGCCGTTGTACTGGATGCGCTTGTTGAGGGCGTCTCGGAGAGCATGGAAGTCGCCGGCGCTTCCAGCAGCATTAgtgagagagagGTCACCAATGATGTTGCTGATTACACCACCGAATGGCTAAATCAAACAAGCTCTTTAGTCTCCAAGTTACTCATGACGTCTTTAGTCTCCAAGTTACTTATGACGTTGCTGATTACAGCAGTGAGTTCTAAAAGTTGA 1575 0.3962 MSRILNNNKKTETIPRILVFAVEIGDRVGDALEVESILEKWKEYNKQQQQLISEGDEVEVIHKVPAKGSRKGCMRGKGGPQNYDYKFRGVRQRIWGKWVAEIRKPINSKHVGEKANRLWLGTFSTALEAAFAYDEAARTMYGPGARLNFPHHYGIKSIGSNGSSISTGFDQKSPSGTYVDILNSDNVAKVDWLEGNLGMGLEEQLKFSQANELLEMECEGGILQEPFKYGMTEKSEVENYKSSNELNCTNHCFGYLHNMIPNSNPKYEQFNNLKSEATIPTKDMEGVLAEILQFYRTCSEMNNVQSQIDQFTYKQYIVSDCKNEAANIIGDSKNHSMQRSNYLVTSGTFGSIANVSENEDLNINNTNKDSTLQEKRNHENSECGCSSGQSRKCSDTRCSDTSQQLQNLGGYLPEHLNNIQFADMELIEEVVEEGRGEGFVGDEVEGGLRVEAVVLDALVEGVSESMEVAGASSSISEREVTNDVADYTTEWLNQTSSLVSKLLMTSLVSKLLMTLLITAVSSKS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02278 524 Gene3D AP2/ERF domain 85 152 IPR036955 GO:0003700|GO:0006355
Aip04g02278 524 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 29 369 - -
Aip04g02278 524 ProSiteProfiles AP2/ERF domain profile. 86 150 IPR001471 GO:0003700|GO:0006355
Aip04g02278 524 SUPERFAMILY DNA-binding domain 86 151 IPR016177 GO:0003677
Aip04g02278 524 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Aip04g02278 524 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Aip04g02278 524 Pfam AP2 domain 86 142 IPR001471 GO:0003700|GO:0006355
Aip04g02278 524 CDD AP2 86 152 IPR001471 GO:0003700|GO:0006355
Aip04g02278 524 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 29 369 - -
Aip04g02278 524 SMART rav1_2 86 156 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02278 Aip-Chr4 104230611 104235469 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02278 33 150 AP2-EREBP Transcription Factor Family AT2G40340 55.462 1.31e-36 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip04g02278 AP2 3.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02278 - - aip:107636903 783.097