Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02275 ATGAAGACTGAAACTATTCCTAGAAAAAGGAGATCGCGCAGGAGACGCAGTGGAGGAAGTGATTCAGTAGAGAGTACTCTTGAGAAGTGGAAGGAGTACAATAAACAGCAACAACCAATGAGTGAAGGAGATGGGGTTGAAGTAATTCACAAGGTTCCTGCAAAGGGATCGAAAAAAGGGTGTATGAAAGGCAAAGGTGGACCACAGAATTATGATTGCAAGTTTAGGGGTGTGAGGCAAAGGATTGGGGGCAAATGGGTTGCAGAAATCCGCAAACCTGTCAATAGCAAGCGTGTTGGTGAAGAAGCAAACAGGCTTTGGCTTGGAACCTTTTCTACTGCACTTGAAGCTGCTCTTGCTTATGATGAAGCAGCAAGGACCATGTATGGCCCTGGTGCTCGTTTGAACTTCCCTCAGCATCATGGCATAGAATTAATAGGTTCTAATGGATCATCTACTGGTCCATTATTTGATCAGAAATCACCAAGTGGAACCTATATAGATACTTTGAATGGTGGTGATGTTGCAAAAGTTGACGGGTTGGAGGGGAATCTTGATATGGGTCTGGAAGAACAACTCAAGTTTTCTGAGGTAAATGAATTATTAGAGATGGAATGTGAGGGAGGAATTCTTCAAGGGCCTTTTAAGTATGTAAAGGACGAAGTTGCTGGAGGAAGTGAAGGACTAGAAGGAGAGTTAGAGGAGGTTTTGAAAAACTCTGGTTTAGTTGAAGAGTGTAATAACTACATGCTAGAGGATTCTATGTGCATGGCTATGAATACAGGAGCTGATTATAACTCTTGTGATGCTACTAAACAGGGAATTATGGGGAAGAGTGAAGTGGAAAATTACAAATCCTGTAATGAGTTGAACTGCACAAACCATTGCTTTGGATACTTGCATAATATGATTCCAAACAGTAATCCTATGATACCAAACGGTAATCCAAAGTATGAGCAGTTCAGCAATCTCAAATCTAAGGCAGCTATTCCGACAAAAGATATGGAGGAAGTACTTGCAGAAATTCGGCAGTTTTGTAAGCAAGTGCTCCAAGGTGAGTAA 1062 0.4162 MKTETIPRKRRSRRRRSGGSDSVESTLEKWKEYNKQQQPMSEGDGVEVIHKVPAKGSKKGCMKGKGGPQNYDCKFRGVRQRIGGKWVAEIRKPVNSKRVGEEANRLWLGTFSTALEAALAYDEAARTMYGPGARLNFPQHHGIELIGSNGSSTGPLFDQKSPSGTYIDTLNGGDVAKVDGLEGNLDMGLEEQLKFSEVNELLEMECEGGILQGPFKYVKDEVAGGSEGLEGELEEVLKNSGLVEECNNYMLEDSMCMAMNTGADYNSCDATKQGIMGKSEVENYKSCNELNCTNHCFGYLHNMIPNSNPMIPNGNPKYEQFSNLKSKAAIPTKDMEEVLAEIRQFCKQVLQGE 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02275 353 SMART rav1_2 74 144 IPR001471 GO:0003700|GO:0006355
Aip04g02275 353 Pfam AP2 domain 73 130 IPR001471 GO:0003700|GO:0006355
Aip04g02275 353 MobiDBLite consensus disorder prediction 17 31 - -
Aip04g02275 353 CDD AP2 73 140 IPR001471 GO:0003700|GO:0006355
Aip04g02275 353 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Aip04g02275 353 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Aip04g02275 353 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 314 - -
Aip04g02275 353 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 314 - -
Aip04g02275 353 MobiDBLite consensus disorder prediction 1 16 - -
Aip04g02275 353 Gene3D AP2/ERF domain 73 140 IPR036955 GO:0003700|GO:0006355
Aip04g02275 353 ProSiteProfiles AP2/ERF domain profile. 74 138 IPR001471 GO:0003700|GO:0006355
Aip04g02275 353 SUPERFAMILY DNA-binding domain 74 139 IPR016177 GO:0003677
Aip04g02275 353 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02275 Aip-Chr4 104196938 104198276 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02275 13 139 AP2-EREBP Transcription Factor Family AT2G40340 55.814 7.55e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip04g02275 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02275 - - aip:107637982 607.06