Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02270 ATGAAGACTGAAACTATTCCTAGTAGAAATAGGAGATCGCGCAGGAGACGCAGTGGAGGAAGTGACTCAGTAGAGAGTACTCTTGAGAAGTGGAAGGAGTACAATAAACAGCAACAACAACTAATCAGTGAAGGAGATGAGGTTGAAGTGATTCACAAGGTTCCTGCAAAGGGATCGAAAAAAGGATGTATGAAAGGCAAAGGTGGACCACAGAATTATGATTGCAAGTTCAGGGGTGTGAGGCAGAGGATTTGGGGCAAATGGGTTGCAGAAATCCGCAAACCTATCCATAGCAAGCGTGTTGGTGAAGAATCAAACAGGCTTTGGCTTGGAACCTTTTCTACTGCACTTGAAGCTGCTCTTGCTTATGATGAAGCAGCAAGGACCATGTATGGCCCTAGCGCTCGTTTGAACTTCCCTCACCATCATGGCATAGAATTAGTAAGTTCTAATGGATCATCTAGTAGTACAGGATTTGATCAGAAATCACCAAGTGGAACCTATATAGATACTTTGAATGGTGGTGATGCTGCAAAAGTTGACGGGTTGGAGGGGAATCTTGATATGGGTCTCGAAGAACAACTCAAGTTTTCTGAGGTAAATGAATTATTGGAGATGGAATGTGAGGAAGGAATTCTTCAAGGGCCTTTTAAGTATGTAAAGGATGAAGTTGCTGGAGGAAGTGAAGGACTGGAAGGAGAGTTAGAGAAGGTTTTGAAGAACTCTGGTATAGTTGAAGAGTGTAATAATTACATGCTTGAGGATTCTATGTGCATGGCTGTAAATATAGGAGCTGATTATAACTCTTGTGATGCTACTGAACAGGGGATTATGGGGAAGAGTGAAGTGGAAAATTACAAATCCTGCAATGAGTTGAGCTGCACAAACCATTGCTTTGGATACTTGCATAATATGATTCCAAACAGTAATCCTATGATACCAAACAGTAATCCAAAGTATGAGCAGTTCAGCAATCTCAAATCTGAGGCATCTATTCCGACAAAAGATATGGAGGAAGTACTTGCAGAAATTCTACAGTTTTGCAAGCAAGTGCTCCAAGGTAAGTAA 1068 0.4148 MKTETIPSRNRRSRRRRSGGSDSVESTLEKWKEYNKQQQQLISEGDEVEVIHKVPAKGSKKGCMKGKGGPQNYDCKFRGVRQRIWGKWVAEIRKPIHSKRVGEESNRLWLGTFSTALEAALAYDEAARTMYGPSARLNFPHHHGIELVSSNGSSSSTGFDQKSPSGTYIDTLNGGDAAKVDGLEGNLDMGLEEQLKFSEVNELLEMECEEGILQGPFKYVKDEVAGGSEGLEGELEKVLKNSGIVEECNNYMLEDSMCMAVNIGADYNSCDATEQGIMGKSEVENYKSCNELSCTNHCFGYLHNMIPNSNPMIPNSNPKYEQFSNLKSEASIPTKDMEEVLAEILQFCKQVLQGK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02270 355 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 324 - -
Aip04g02270 355 CDD AP2 75 142 IPR001471 GO:0003700|GO:0006355
Aip04g02270 355 ProSiteProfiles AP2/ERF domain profile. 76 140 IPR001471 GO:0003700|GO:0006355
Aip04g02270 355 SUPERFAMILY DNA-binding domain 76 141 IPR016177 GO:0003677
Aip04g02270 355 Gene3D AP2/ERF domain 75 141 IPR036955 GO:0003700|GO:0006355
Aip04g02270 355 SMART rav1_2 76 146 IPR001471 GO:0003700|GO:0006355
Aip04g02270 355 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Aip04g02270 355 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Aip04g02270 355 MobiDBLite consensus disorder prediction 1 28 - -
Aip04g02270 355 Pfam AP2 domain 75 132 IPR001471 GO:0003700|GO:0006355
Aip04g02270 355 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02270 Aip-Chr4 104062627 104064559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02270 14 157 AP2-EREBP Transcription Factor Family AT2G40340 51.724 2.07e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip04g02270 AP2 5.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02270 - - aip:107637982 656.751