Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02262 ATGCAATCTTTGACCATGAATAATAACAAATTTTCAGGAGAAATACCAGCTATCATAGGTGACCTAAGACAATTGTCTGAGCTAGATTTGGCATATAATATGTTGAACGGAAACATTCCTTCAGCCATTGGAAATTGCACGAGATTACAAATTCTAGATGTTTCATCTAACAACCTTAGTGGAATCATACCATCACAAGTATTTGAAATTCCATCTTTGTCAATCTTGTTGAACATTTCACACAACTCATTAAATGGTACTTTACCAAGTGAAGTAGGCCTGCTTAAAAGTATTATTGCACTAGATGTTTCCGAGAATCATCTATCTAATAAGATTCCGGAAGCAATTGGAGAATGTGAGAGTTTGGAGTACCTTTATTTGCAGGGGAATTCCTTTCATGGAATCATACCACCTTCTCTTGCTTCTCTAAAAGGTCTTCAAGAGTTAGACATTTCACGGAATCAGTTGTCCGGAACAATTCCACAAGAACTGCAGAACATTTCTGTTTTGGTATACTTCAATGCTTCTTTTAACATGTTAGAGGGTGAGGTACCAATGAACGGCGTGTTCCGAAACGCAACTGAAGTTTCATTGAGTGGCAATGGCAAGCTTTGTGGAGGGATCTCAAGCTTAAGGCTTCCACCGTGTCCTTCAAAAGCTACAAAAAAGAGAAAACATCATGGATTCAAGATTTGGATGATAGTTATCATAACATCTTCAGTTGTGTTTCTTCTTTTGCTTTCATCAATTCTTGCACTCGTTTCTAGAAGAAGAAGACAAAGAAAAGCATCTGTTGATTCAACAAATGAGAAAGTGCCCAGAGTATCATATCAGAACCTATATAATGCAACAAATGGGTTCTCAACAGAGAACTTAATAGGATCCGGTGGTTATGGCTCTGTGTATAAAGCAATACTTGATTCTGCAGAAGAAGTTGTTGCTGTAAAGGTTCTAAACCTTCAACTGAAAGGAGCCCACAAAAGTTTCACGGCTGAATGCAATGCTTTAAGAAATATCAGGCACAGAAATCTAGTGAAGATTGTAACATGTTGCTCTAGTGTGGATTACAAGGGAAATCATTTTAAGGCTCTGGTTTACGAGTACATCTCGAATGGAAGCTTAGACAAATGGTTGCATCCCAATAGAGAAAGTTCGAACCAACTAAGAATGTTAAACCTGCAGCAGAGATTAGAAGTTATTAGGGGCGTTGCTTCCGCAATGCATTATCTTCACTATGAATGTGAGCAGCCAGTAATTCATTGTGATTTGAAGCCGAGCAATGTCCTTCTTGGAGATAACATGGATGCTCAAGTGAGTGATTTCGGTTTAGCAAGACTTATCTCAGCAGTTGATGGCAACTCTCAGAACCAAACCAGCACCAGTGGAATCAAAGGAACAATAGGTTATGCTCCTCCAGAATATGGAACAAGTTCTCAAGTGTCAATAGAAGGTGACATATATAGCTTTGGCATTCTTGTTTTGGAGATGCTAACCGGGAAAAGACCAACAGAGGAAATGTTCAAAGATGGGTGTAGCCTCCACAACTATGCCCGTGATGCATGTCCAGATAATATCTTGGAGATTGTTGATGCAACTCTGCTGTCATTGATAGGTGAAGAAATTCAAACACCAACAGCTGCAGAAGAAAATAATCATATTGAGAATGCAGGACATTTGGAGAGTAATGTTGAGAACTGCTTATTCTCATTATTCAAGATTGGTCTTGCTTGTTCTGTGGACTCACCAAGAAAAAGGATGAATATGATGGAAGTCAATAGAGAACTCAACATTATCAAAAATAATTATGGATTACTTATGTGA 1821 0.3833 MQSLTMNNNKFSGEIPAIIGDLRQLSELDLAYNMLNGNIPSAIGNCTRLQILDVSSNNLSGIIPSQVFEIPSLSILLNISHNSLNGTLPSEVGLLKSIIALDVSENHLSNKIPEAIGECESLEYLYLQGNSFHGIIPPSLASLKGLQELDISRNQLSGTIPQELQNISVLVYFNASFNMLEGEVPMNGVFRNATEVSLSGNGKLCGGISSLRLPPCPSKATKKRKHHGFKIWMIVIITSSVVFLLLLSSILALVSRRRRQRKASVDSTNEKVPRVSYQNLYNATNGFSTENLIGSGGYGSVYKAILDSAEEVVAVKVLNLQLKGAHKSFTAECNALRNIRHRNLVKIVTCCSSVDYKGNHFKALVYEYISNGSLDKWLHPNRESSNQLRMLNLQQRLEVIRGVASAMHYLHYECEQPVIHCDLKPSNVLLGDNMDAQVSDFGLARLISAVDGNSQNQTSTSGIKGTIGYAPPEYGTSSQVSIEGDIYSFGILVLEMLTGKRPTEEMFKDGCSLHNYARDACPDNILEIVDATLLSLIGEEIQTPTAAEENNHIENAGHLESNVENCLFSLFKIGLACSVDSPRKRMNMMEVNRELNIIKNNYGLLM 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02262 606 ProSiteProfiles Protein kinase domain profile. 287 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02262 606 PRINTS Leucine-rich repeat signature 49 62 - -
Aip04g02262 606 PRINTS Leucine-rich repeat signature 143 156 - -
Aip04g02262 606 SMART serkin_6 287 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02262 606 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515
Aip04g02262 606 Gene3D Phosphorylase Kinase; domain 1 249 368 - -
Aip04g02262 606 Pfam Protein kinase domain 288 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02262 606 PANTHER OS04G0122200 PROTEIN 1 603 - -
Aip04g02262 606 SUPERFAMILY Protein kinase-like (PK-like) 266 598 IPR011009 -
Aip04g02262 606 PANTHER LRR RECEPTOR-LIKE KINASE 1 603 - -
Aip04g02262 606 Gene3D Ribonuclease Inhibitor 1 225 IPR032675 -
Aip04g02262 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Aip04g02262 606 Gene3D Transferase(Phosphotransferase) domain 1 369 603 - -
Aip04g02262 606 ProSitePatterns Protein kinases ATP-binding region signature. 293 316 IPR017441 GO:0005524
Aip04g02262 606 SUPERFAMILY L domain-like 2 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02262 Aip-Chr4 103932962 103934981 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02262 1 602 Receptor kinase-like Gene Family AT3G47570 45.425 9.19e-180 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Aip04g02262 Pkinase 7.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02262 - - ahf:112742943 910.983