Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02259 CATCTGTATAATGCAACAAATGAGAAAGTGCCCAGAGTATCATATCAGAACCTATATAATGCAACAAATGGGTTCTCAAATGAGAACTTAATAGGATCCGGTGGTTATAGCTCTGTGTATAAAGCAATACTTGATTCTGCAGAAGAAGTTGTTGCTGTAAAGGTTCTAAACCTTCAACTGAAAGGAGCTCACAAAAGTTTCACGGCTGAATGCAATGCTTTAAGAAATATCAGGCACAGAAATCTAGCGAAGATTGTAACATGTTGCTCTAGTGTGGATTACAAGGGAAATGATTTTAAGGCTCTGGTTTACGAGTACATGTCGAATGGAAGCTTAGACAAATGGTTGCATCCCAATAGAGAAAGTTCGAACAAACTAAGAACGCTAAACCTGCCGCAGAGATTACAAGTTATTATGGGCATTGCCTGCGCATTGCATTATCTTCACTATGAATGTGAGCAGCCTGTTATTCATTGCGATTTGAAGCCGAGCAATGTCCTTCTTGAAGATAACATGGATGCTCAAGTGAGTGATTTCGGTTTAGCAAGACTTATCCCAGTGGTTGATGGCAACTCTCAAAACCAAACCAGCACCAGTGGAATCAAAGGAACAATAGGTTATGCTCCTCCAGAATATGGAACAAGTTCTCAAGTGTCAATAGAAGGTGACATATATAGCTTTGGCATTCTTGTTTTGGAGATGCTAACCGGGAAAATACCAACAGAAGAAATGTTCAAAGATGGGTGTAGCCTCCACAACTATGTCCGTGATGCATGTCCAGATAATATCTTGGAGATTGTTGATACAACTCTGCTGTCATTGATAGGTGAAGAAATTCAAGCACCAACAGGTGTAGAAGAAAATAATCATATTGAGAATGAAGGACATTTGCAGAGTAATGTTGAGAACTGCTTATTCTCATTATTCAAGATTGGTCTTGCTTGTTCTGTGGACTCACCAAGAGAAAGGATGAACATGATGGAAGTCAATAGAGAACTCAACATTATCAAAAATAATTTTCATGCTTGA 1029 0.3887 HLYNATNEKVPRVSYQNLYNATNGFSNENLIGSGGYSSVYKAILDSAEEVVAVKVLNLQLKGAHKSFTAECNALRNIRHRNLAKIVTCCSSVDYKGNDFKALVYEYMSNGSLDKWLHPNRESSNKLRTLNLPQRLQVIMGIACALHYLHYECEQPVIHCDLKPSNVLLEDNMDAQVSDFGLARLIPVVDGNSQNQTSTSGIKGTIGYAPPEYGTSSQVSIEGDIYSFGILVLEMLTGKIPTEEMFKDGCSLHNYVRDACPDNILEIVDTTLLSLIGEEIQAPTGVEENNHIENEGHLQSNVENCLFSLFKIGLACSVDSPRERMNMMEVNRELNIIKNNFHA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02259 342 ProSiteProfiles Protein kinase domain profile. 25 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02259 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Aip04g02259 342 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 341 - -
Aip04g02259 342 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Aip04g02259 342 Gene3D Transferase(Phosphotransferase) domain 1 107 341 - -
Aip04g02259 342 SMART serkin_6 25 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02259 342 Pfam Protein kinase domain 26 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02259 342 Gene3D Phosphorylase Kinase; domain 1 4 106 - -
Aip04g02259 342 SUPERFAMILY Protein kinase-like (PK-like) 9 336 IPR011009 -
Aip04g02259 342 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 9 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02259 Aip-Chr4 103853404 103854628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02259 12 340 Receptor kinase-like Gene Family AT3G47570 50.301 3.83e-107 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Aip04g02259 Pkinase 2.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02259 - - ahf:112742943 670.233