Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02235 ATGGCTTCTTCTTCAGCAAGAAGAGAGAAAGTGCCACTAACCGTGACACTACTCACCTTCTTGTTGATTCTTCTCCTTGGAAACTTTACTTCTATGGTCTCTGCTTCTGGCAATTGCGGTTCGGAAGGCTCAACATGCCTCGTGCCTTCTGAGTTCGTCGGTGTTGTTAAGGAAGTTATTGGGCTCTTGGGGAATGTTGGTTCCATCCTGTCCAAGTTTACTGGTGGTTTTGGTAATTTCCATCTCACAAACGCCATTCTTGACGGTCTTGATTTGTTGGACATGTCCTCCGATGAACTTAATTTGTTTCTCTCCGTCATTCAAAATCCCAAAGGGAGAAACAACTTAGAATTCGATTTGGCGACATGGCTAAGTGCTGTCCTAGCAAATTTAGACACATGCCTGAATGGATTCGAAGGCACAAATAGTATCATCAAAGGGTTAATCTCCCCTGGCCTTAGACTAGTGACATCGCCAGTAACGAATCTTCTCGCAAAGGTTGATGTGTCCCAGAATGATTTCTTCGAAGATGCGGCCGCCGGCGCTGGCGAGGGCCGATTTCCTTCGTGGGTGAAACCGAGGGAGAGAAAGCTTCTGCAAGCAAATAGGGTGGTTGCGAACGCCGTGGTAGCTGCAGATGGGAGTGGAAACTTTAGAAGAGTGATGGATGCGGTTATGGCAGCGCCGAATAATAGTAATACGAGGTTTGTGATTTACGTGAAGAAAGGTGTTTACAATGAGTACGTAGAGATTAACAAGAATAAACGGAATATCATGATGATCGGAGATGGTATCGGTGCCACTGTTATCACCGGCAACCGAAATTATGTCGACGGCTGGACAACTTTTCGATCGGCCACCTTTGTTGTAGTTGGAGGAGGGTTTATAGCACGAGACATTACTTTTCAAAACACAGCAGGGCCAGCGAAGAAGCAAGCCGTGGCACTAAGAACCGATTCTGACTTCTCCGTCTTTTTCCGTTGTGGAATCTTCGGCTACCAAGACACCCTTTACGTTCACTCAATGCGTCAATTCTTCAGAGAGTGCACGATTTCCGGCACCATCGATTTCATCTTCGGCTATGGAACCGCCGTCTTCCAAAAATGCAACATACTTATCAAAAAAGGGTCAGCGGACCAAAAGAACGCAATCACTGCACACGGCAGAGAAGATCCTAACGAACCAACAGGGTTCTCGTTGCAATTCTGCAACATAATCGCTGACTCTGACCTCGTTCCGTTTGTTAAGACGACGGAATCTTTCTTGGGGAGGCCATGGAAAAAGTATTCAAGAACAGTTTTTATGCAAAATTATATAAGCGACGTTATAAGCCCACTAGGTTGGGCACCATGGAATGGGAGCATTGGGTTGGACACACTGTATTATGCTGAGTATATGAACACTGGTCCCGGTGCGGGTGTAGCTAACAGAGTGAAATGGCCTGGATACCGTGTTTTGAAAACCGCCCGTGAAGCTAGTAATTTTACTGTGGCAAACTTCATTCAAGGGAACTCATGGTTGCCTTCAACTGGTGTCGCATTTTCAGCTGGATTATCTGTTTAA 1563 0.46 MASSSARREKVPLTVTLLTFLLILLLGNFTSMVSASGNCGSEGSTCLVPSEFVGVVKEVIGLLGNVGSILSKFTGGFGNFHLTNAILDGLDLLDMSSDELNLFLSVIQNPKGRNNLEFDLATWLSAVLANLDTCLNGFEGTNSIIKGLISPGLRLVTSPVTNLLAKVDVSQNDFFEDAAAGAGEGRFPSWVKPRERKLLQANRVVANAVVAADGSGNFRRVMDAVMAAPNNSNTRFVIYVKKGVYNEYVEINKNKRNIMMIGDGIGATVITGNRNYVDGWTTFRSATFVVVGGGFIARDITFQNTAGPAKKQAVALRTDSDFSVFFRCGIFGYQDTLYVHSMRQFFRECTISGTIDFIFGYGTAVFQKCNILIKKGSADQKNAITAHGREDPNEPTGFSLQFCNIIADSDLVPFVKTTESFLGRPWKKYSRTVFMQNYISDVISPLGWAPWNGSIGLDTLYYAEYMNTGPGAGVANRVKWPGYRVLKTAREASNFTVANFIQGNSWLPSTGVAFSAGLSV 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02235 520 PANTHER PECTINESTERASE 47 518 - -
Aip04g02235 520 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 47 518 - -
Aip04g02235 520 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Aip04g02235 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 165 IPR035513 -
Aip04g02235 520 Pfam Pectinesterase 207 504 IPR000070 GO:0030599|GO:0042545
Aip04g02235 520 Gene3D - 201 518 IPR012334 -
Aip04g02235 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 169 IPR035513 -
Aip04g02235 520 SUPERFAMILY Pectin lyase-like 207 517 IPR011050 -
Aip04g02235 520 SMART PMEI_2 30 166 IPR006501 GO:0004857
Aip04g02235 520 Pfam Plant invertase/pectin methylesterase inhibitor 85 146 IPR006501 GO:0004857
Aip04g02235 520 CDD PMEI-like_4 32 165 - -
Aip04g02235 520 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02235 Aip-Chr4 103072355 103075426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02235 20 518 Carbohydrate Esterase AT3G43270 56.725 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02235 K01051 - gmx:100814987 614.379