Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02234 ATGGCCACAGACACTTCTCCGAACTTTCAGGCGGTCATTCCCACTACTGAGTTCCACACAGAACTTTCACTACCAACACCAGATCACGATGGCTTGGAGTTCTGGCAGTACATGGTTGCAGGTTCAATAGCAGGATCAGTGGAGCACATGGCTATGTTCCCAGTTGACACTCTCAAGACCCGCATGCAAGCTCTTACAACAACCACCACCACCACTTCATGCCTCCTCCATCCCTTCCGCCTCCGCCAATCCCTCTCTTCCATCCTCAAACTCGAAGGTCCTTCCTCCCTCTACCGCGGCATCTCCGCCATGGCCCTCGGTGCAGGCCCCGCCCACGCCGTTTACTTCTCCGTCTACGAGTTCTGCAAACAAGCCTTCTCCTCCTCTTTCACCACCAACAATTACTCCTCACTGCTGCATGCCGCTTCTGGTGTCTGCGCTACAGTCACCAGCGACGCCGTTTTCACTCCCATGGACGTCGTGAAGCAGAGGCTTCAGCTGAAGAGCAGTCCGTACAAGGGTGTGGTGGATTGCGTGAGGAGAGTGGCCCTCGAAGAAGGGGTTGCCGCGTTTTTTAAGTCGTATCGGACTACGGTTGTGATGAACGCTCCGTTTACGGCGGTGCATTTTGCGGCGTATGAGGCGACAAAGAAGGGGTTGGTGGAGGTGTCGCCGGAGAGCGCGGATGACAGGAGGTGGGTGGTTCATGCTACCGCTGGTGGTGCTGCCGGAGCCCTGGCTGCTGTTGTCACAACCCCGCTTGATGTTGTCAAAACTCAACTTCAGTGCCAGGGTGTTTGTGGATGTGACAGATTCTCTAGTAATTCAATTGGGCATGTTATTCAAACAGTGATAAGAAAAGATGGATATAGAGGTCTCATGAGAGGTTATGTCCCTAGGATGCTGTTTCATGCCCCTGCAGCTGCAATTTGTTGGATGCAATTTGAAGGCATTGATGAAGAGGAAGATGATACTGGTAATGCCGGCATCATCATGAAGGAAGAGTTTGATCCTACGGCACCTGAATTAGAGACGGGGCTGCATCCTATAAAAGGAGACATGGAGATTAATCAGCTGCGTGAGAATAAACTAAAGAACAAGGACTTGAAGGAGTTTTATTTATATTTTGATTACCTAATAATGATTACTCCTCTTGAAGATCTCGACATGGACTTTGACATTGATACAGATGTTGAGGAAGAGTCCAATGATAATGAGGTGGGAAAGAAGAGTTCAAAGATGGTTAATTTGAAGAAGAAGACTTCAACAGTTGATAATAAATGCCTATTGGTGCTAGAGAGCCAAAATCTGCTGAGCCTACTAGTGCTGGAGTCACAAAATTTTGTGGGCCTATTGGTGCTAAGGCCAATTCCAAGAACCCAAAAAATACTACACAAATGGGGTGCTAGCTCAACTTCATTTGGGACAAATTTTGGTGGAAGAGAAGCTGCTGTTCCAAGACTGGAAGATGTAAATTCTGGTGAAGATGATGAACAAAATACAGAAAATGTGGAGGAAGAAGATTCAATCTTTGAGTACAAATCAAAGTCATTGTTAACACCGAAAAATTCTGAAGATGAAAGAGAAAGATATGAATTTTCACAATTTAATGATGCTGCTGAATTGAGAGAGGCTAGAAAGCTAAAGGGGGCCAAGGAGGAATCTACTAATGAGAATGCAGAGGCTGTGAATAAAAAGGCTGCAAATGTGACTTTTGAAACTGATTCTGTTGAAACTGTTACTACTGAGGCCGCATAA 1758 0.467 MATDTSPNFQAVIPTTEFHTELSLPTPDHDGLEFWQYMVAGSIAGSVEHMAMFPVDTLKTRMQALTTTTTTTSCLLHPFRLRQSLSSILKLEGPSSLYRGISAMALGAGPAHAVYFSVYEFCKQAFSSSFTTNNYSSLLHAASGVCATVTSDAVFTPMDVVKQRLQLKSSPYKGVVDCVRRVALEEGVAAFFKSYRTTVVMNAPFTAVHFAAYEATKKGLVEVSPESADDRRWVVHATAGGAAGALAAVVTTPLDVVKTQLQCQGVCGCDRFSSNSIGHVIQTVIRKDGYRGLMRGYVPRMLFHAPAAAICWMQFEGIDEEEDDTGNAGIIMKEEFDPTAPELETGLHPIKGDMEINQLRENKLKNKDLKEFYLYFDYLIMITPLEDLDMDFDIDTDVEEESNDNEVGKKSSKMVNLKKKTSTVDNKCLLVLESQNLLSLLVLESQNFVGLLVLRPIPRTQKILHKWGASSTSFGTNFGGREAAVPRLEDVNSGEDDEQNTENVEEEDSIFEYKSKSLLTPKNSEDERERYEFSQFNDAAELREARKLKGAKEESTNENAEAVNKKAANVTFETDSVETVTTEAA 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02234 585 SUPERFAMILY Mitochondrial carrier 30 316 IPR023395 -
Aip04g02234 585 MobiDBLite consensus disorder prediction 548 567 - -
Aip04g02234 585 ProSiteProfiles Solute carrier (Solcar) repeat profile. 32 125 IPR018108 -
Aip04g02234 585 PANTHER MITOFERRIN-1-RELATED 1 317 - -
Aip04g02234 585 Pfam Mitochondrial carrier protein 232 318 IPR018108 -
Aip04g02234 585 Pfam Mitochondrial carrier protein 137 221 IPR018108 -
Aip04g02234 585 Pfam Mitochondrial carrier protein 32 128 IPR018108 -
Aip04g02234 585 ProSiteProfiles Solute carrier (Solcar) repeat profile. 135 219 IPR018108 -
Aip04g02234 585 Gene3D Mitochondrial carrier domain 224 322 IPR023395 -
Aip04g02234 585 Gene3D Mitochondrial carrier domain 10 223 IPR023395 -
Aip04g02234 585 Coils Coil 545 565 - -
Aip04g02234 585 ProSiteProfiles Solute carrier (Solcar) repeat profile. 231 321 IPR018108 -
Aip04g02234 585 PANTHER MITOFERRIN-LIKE 1 317 - -
Aip04g02234 585 PRINTS Mitochondrial carrier protein signature 50 64 IPR002067 GO:0055085
Aip04g02234 585 PRINTS Mitochondrial carrier protein signature 100 120 IPR002067 GO:0055085
Aip04g02234 585 PRINTS Mitochondrial carrier protein signature 150 168 IPR002067 GO:0055085
Aip04g02234 585 PRINTS Mitochondrial carrier protein signature 240 262 IPR002067 GO:0055085
Aip04g02234 585 PRINTS Mitochondrial carrier protein signature 37 50 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02234 Aip-Chr4 103047361 103054940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02234 7 318 Chloroplast and Mitochondria Gene Families AT1G07030 64.856 1.03e-138 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02234 K15113 - tcc:18597466 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02234 04 103047361 103054940 Aip04g02234 04 103047361 103054940 ECH