Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02225 ATGGAGTGTGAATGTAGTAGGTGGAGTAGTGAAGGCATTCCCTGTAGCCACATGTTTTGTGCCATGAAAAGGGTAGGTTTACAGAAGTTTCCAGAAAGTCTTCTTTTGAGAAGATGGTCCAAGGATGCCAAAAAGTATCTGGACGAAAGTTCAGCTGGAAGCACTGTGCAAGATGGAGAAAGAGAATTTTTAATGCGCTATGGTGCATTGTCAATGGCAGCTACGTGGATGGTATTCTTAGGAGCTCAAGATGGTCCTTCTTTCCATGACACTATGAATGAAGTCTCTCGTTTGACCAAAACACTAGAGCAAAAGTCGTGCTTGAAAAGAGGAAGAAGAGATTCTCCCATGCCGAACTTTGTTGGTGACCCTTCAGTTGTCAAGACAAAAGGTGCACCAAAGGGAAAAAAAGAGAGAGAAAAACGGAGGTGCACTAAATGCAACAATGCTGGTCATGTAAAGAAGAATTGTCCTGTGAAGAATGAGGGTGACAATTTGGGTGATAAGATTGGTGGTGGCATACAGGCTAGCTTTGGTGCAGAAGAGGAGCTTTCCAAAGATCCTATGGCTTCTCAAGGGACGCAAGCTAGCTTCGGTACAGAAGAGGTTAAGCTTCTCAAGGACACTATGACTTCTCAAGATACATTAGCAGTGCCAAATACAGAAGTAAATGCATCTATGCAGTTAGGGTTTGGGCTAGGTGACTCAGAATTGATTAATAGCCATGGGGCTCCCATCCCACCATATGGAAGTAATCAGTGGCTATTACAGGAAGCTGAAAGAATCAAAAGGTGCAAGGGCAAGGTATTTGCCTTGCAAGATGAACCAGAAGTTCCAAGGGTGTGGTTACCTTTTGATGATGCACCTAGATTAGCAATGGCTAGAGCATTTGGCGATTTTTGTTTGAAGGATTACGGTGTCATTTCTATACCAGAATTTTCTCACCGGCTTCTTACAGACAAAGACGAGTTCATTGTTCTTGCCTCGGATGGAGCTACTTATGAACCGCGGAAGAAAATCAAACATATGGAGGAATATCTGTTGATGGTGAGGATGGAGCTTCAGCAGTAG 1071 0.4351 MECECSRWSSEGIPCSHMFCAMKRVGLQKFPESLLLRRWSKDAKKYLDESSAGSTVQDGEREFLMRYGALSMAATWMVFLGAQDGPSFHDTMNEVSRLTKTLEQKSCLKRGRRDSPMPNFVGDPSVVKTKGAPKGKKEREKRRCTKCNNAGHVKKNCPVKNEGDNLGDKIGGGIQASFGAEEELSKDPMASQGTQASFGTEEVKLLKDTMTSQDTLAVPNTEVNASMQLGFGLGDSELINSHGAPIPPYGSNQWLLQEAERIKRCKGKVFALQDEPEVPRVWLPFDDAPRLAMARAFGDFCLKDYGVISIPEFSHRLLTDKDEFIVLASDGATYEPRKKIKHMEEYLLMVRMELQQ 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02225 356 ProSiteProfiles Zinc finger SWIM-type profile. 1 26 IPR007527 GO:0008270
Aip04g02225 356 ProSiteProfiles PPM-type phosphatase domain profile. 123 356 IPR001932 -
Aip04g02225 356 SUPERFAMILY Retrovirus zinc finger-like domains 133 162 IPR036875 GO:0003676|GO:0008270
Aip04g02225 356 Pfam Protein phosphatase 2C 257 331 IPR001932 -
Aip04g02225 356 PANTHER - 256 332 - -
Aip04g02225 356 PANTHER ALPHABET, ISOFORM E-RELATED 256 332 - -
Aip04g02225 356 MobiDBLite consensus disorder prediction 110 142 - -
Aip04g02225 356 Gene3D - 251 347 IPR036457 -
Aip04g02225 356 SUPERFAMILY PP2C-like 253 331 IPR036457 -
Aip04g02225 356 ProSiteProfiles Zinc finger CCHC-type profile. 142 158 IPR001878 GO:0003676|GO:0008270
Aip04g02225 356 SMART 26again6 1 28 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02225 Aip-Chr4 102964403 102967009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02225 255 332 PP2C-type Phosphatase Gene Family AT1G03590 85.897 6.81e-41 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02225 - - ahf:112717474 371.703