Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02202 ATGATGCAGTCTAATGAGATTCTTCAATCTCCATCCTCACTCTTTGATGAGCCATATTATTATTATGGGTTGAGTAGCATGGATGAAGATGGTGATGATTATGGATTCAGTGCCATATTCAACACTTGTTCATCAGAAAACACCATCTTCACGAATGAATATGATCATCACATTCAATACACAATCGATGATGAAACCTTGCAACTCCAACCCTTGATCCATGATTTCCCAATGAAATTCCACGATCTGACTCACCAGTTTCTTGAGAGTGAAGGAAGCATCATCCCTTCACAAGAAGCATATAGTCCCACCCAGTCATTCAATTCAGACATGTCCTCATCATCATCGACACCACTGAACTTGCCTCAACCGAACACGCAAATCGAGAACCACTTGATCCTTCCGCACTTGGTGGACGCCATTGGAGAAGCCTTGGAGAATCGACACAAAGCGCTCGCTGAAGAGATCTTGAGATGCATCAGCAACAAACTCAGCCCTCTCTCCCAAACCGTTGACGAGCGCCTCCACTTTTACATGTCGCTAGCAACCGCCGCAAACAACGGAGACTATTTGAAAGGGGAAGCCTTGAAGAACTCTGACGCTGCTTTCAGGGCATTCTATCAAGGAACCCCTTTCGGCAAATTCGCTCACTTTGTGGCCCTTTCTGCAATTATTGAAAACATGCCGCCAGACTGTGATGCCGTACACGTGGTGGACTCTTACATGGGAATTGGGATCCAATGGATTCCAATGATTGAGGCCATGGCTCGGAGGAACATAACACAATTCAAATTGACATCAATCAGTTCCGGTCATCATCAGCAAGGGCATGATGGTAATTCCACTACTCCTTGGATTTCTGAGGAAACTAAGAGGCATCTCTATGAGCATGCAAGATCGTGGGGATTGAATCTGAAGGTGGAGGAAAAGGGAATTGAGGAACTTGTTAGTGAGTTGAAGAATGTGAAGAAAAGTGGTGGCAGTGGCATCAGAGAGTTTTTGGCCTTCAATTGCATGCTTAACCTGCCACATATGGCCAATAGAAGCAGCAGAAAACAAGCCATGGAATTTCTGAAGCTGGCTAAGGATTTGATCAATGGCTCTGGGAACAAGGGAATCATCACTTTTGGTGATGGTGATGCGTTTGAGAAACTCAAGACCAGCATGAATTTCAAGGCATTCTTTGATGGTCATTTGGTGCATTACCATGCCTTAATGGAATCAATTGAGTCATGTTTCCCAACAAGTTTCTCAGAGGCAAGGACTCTTATAGAGTCCCTATTTGTGGCGCCTCATGTGTCTCCTTTTGCTTGGTTACAAAATTGGCAAGAGATGGAGAGGGATTCTTGCCATGTTCCTGGGGAAACTGAAATTGGACTAGAAGGTTGCAGATTGAGCACAAGCATTTTAATGGAAGTAAGAGAAATGTTGAGAGGTAGTGGAGGTTCGTATGAGACAAGGATTGAAGGGCAAAATGGGAATGAAATTGTTCTGGCATGGAAAGGAACAGAACTAGTGAGAGTTTCTGCTTGGAGAAACTAA 1542 0.4416 MMQSNEILQSPSSLFDEPYYYYGLSSMDEDGDDYGFSAIFNTCSSENTIFTNEYDHHIQYTIDDETLQLQPLIHDFPMKFHDLTHQFLESEGSIIPSQEAYSPTQSFNSDMSSSSSTPLNLPQPNTQIENHLILPHLVDAIGEALENRHKALAEEILRCISNKLSPLSQTVDERLHFYMSLATAANNGDYLKGEALKNSDAAFRAFYQGTPFGKFAHFVALSAIIENMPPDCDAVHVVDSYMGIGIQWIPMIEAMARRNITQFKLTSISSGHHQQGHDGNSTTPWISEETKRHLYEHARSWGLNLKVEEKGIEELVSELKNVKKSGGSGIREFLAFNCMLNLPHMANRSSRKQAMEFLKLAKDLINGSGNKGIITFGDGDAFEKLKTSMNFKAFFDGHLVHYHALMESIESCFPTSFSEARTLIESLFVAPHVSPFAWLQNWQEMERDSCHVPGETEIGLEGCRLSTSILMEVREMLRGSGGSYETRIEGQNGNEIVLAWKGTELVRVSAWRN 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02202 513 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 64 512 - -
Aip04g02202 513 Pfam GRAS domain family 139 512 IPR005202 -
Aip04g02202 513 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 64 512 IPR005202 -
Aip04g02202 513 MobiDBLite consensus disorder prediction 100 120 - -
Aip04g02202 513 ProSiteProfiles GRAS family profile. 125 512 IPR005202 -
Aip04g02202 513 Coils Coil 305 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02202 Aip-Chr4 102344475 102346317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02202 206 512 GRAS Transcription Factor Family AT5G17490 23.323 1.22e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip04g02202 GRAS 6.3e-34 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02202 - - adu:107485006 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02202 04 102344475 102346317 Aip04g02202 04 102344475 102346317 ECH