LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip04g02193	ATGGCTACCGCTACTGAGAAAGCCATTGGCATCGATCTCGGCACCACTTACAGCTACGTGGCCGTGTGGCAGAACGACCGCATAGAGATCATCGCCAACGACCAAGGCAACCGAACCACTCCTTCCTACGTTGCCTTCACGGACACTGAGCACCTCATCGGAGATGCTGCCACCCACAGAACACGGTGTTCGACGCCAAGCGCCTCATTAGTCAGGCAGGCCACCAAGGACGCTAACGCCATTGCAAGCCTCAACGTCATGAGAATTATCAACGAGACAACCGCTGTTGCCTACGGCTTAGACAAGAAGGCCTCCAAAACTGGCGAGAAGAACATCCTCATCTTCGACCTCGGGAGCGGCACCTTTGACGTGTCTCTCCTGACTATCGAGAAGGACATCTTTGAGGTGAATGCCACTGCCGGTGACACCCACTGGGGGGCGAGGATTTCGACAACAGGCTGGTGA	465	0.557	MATATEKAIGIDLGTTYSYVAVWQNDRIEIIANDQGNRTTPSYVAFTDTEHLIGDAATHRTRCSTPSASLVRQATKDANAIASLNVMRIINETTAVAYGLDKKASKTGEKNILIFDLGSGTFDVSLLTIEKDIFEVNATAGDTHWGARISTTGW	154

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip04g02193	154	ProSitePatterns	Heat shock hsp70 proteins family signature 1.	11	18	IPR018181	-
	Aip04g02193	154	Gene3D	-	70	112	-	-
	Aip04g02193	154	ProSitePatterns	Heat shock hsp70 proteins family signature 2.	114	127	IPR018181	-
	Aip04g02193	154	Gene3D	-	1	69	-	-
	Aip04g02193	154	PANTHER	HEAT SHOCK PROTEIN 70KDA	5	60	IPR013126	GO:0005524\|GO:0140662
	Aip04g02193	154	PANTHER	HEAT SHOCK PROTEIN 70KDA	72	147	IPR013126	GO:0005524\|GO:0140662
	Aip04g02193	154	SUPERFAMILY	Actin-like ATPase domain	7	99	IPR043129	-
	Aip04g02193	154	Gene3D	-	113	151	-	-
	Aip04g02193	154	Pfam	Hsp70 protein	72	147	IPR013126	GO:0005524\|GO:0140662
	Aip04g02193	154	Pfam	Hsp70 protein	8	60	IPR013126	GO:0005524\|GO:0140662
	Aip04g02193	154	SUPERFAMILY	Actin-like ATPase domain	107	148	IPR043129	-
	Aip04g02193	154	PRINTS	70kDa heat shock protein signature	7	20	-	-
	Aip04g02193	154	PRINTS	70kDa heat shock protein signature	35	47	-	-
	Aip04g02193	154	PANTHER	SHOCK PROTEIN, PUTATIVE-RELATED	5	60	-	-
	Aip04g02193	154	PANTHER	SHOCK PROTEIN, PUTATIVE-RELATED	72	147	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip04g02193	Aip-Chr4	101876992	101877662	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip04g02193	8	60	Calmodulin-binding Proteins	AT3G12580	83.019	5.68e-25	97.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip04g02193	K03283		-	psom:113278701	149.443