LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip04g02188	ATGAGGAAACTAAGATTTAATCTGAAGGGACTGGGGCCGCTTCCTCCGACTGGTGGGAGTGGCGGAATAAGGAGAAACGACAATGCATCAAAATCTTTTAGGGTAGGAATGAGAAGGGGGTCGAATGGGCTAAGAGTACTTGGGAGATCCCTGAAAAGTGGAGTGACGTGGGCATCAGTGTTCCCAGAAGATCTTAAAGTGTCTGAGAGAAAAATATTTGACCCTCAAGACAAGACCCTTCTGCAGTGGAATAAATTCTTTCAAGTTTTGTGTATCATATCTGTATCTTTTGATCCCCTTTTCTTTTATCTCCCATATTTCAATCACAAATCATTCTGTCTTGCCATAGACAGCAGCCTGGCAAGCTATGCAGTTACACTCAGAACAATCTTCGATGCTATCTACATCCTTCGCATAAGTTTCCAGTTTCGCACTGCTTTCATTGCGCCTTCTTCTCGTGTCTTTGGACGAGGTGAACTCGTCATAGATCCTGCAGAGATTGCTAAGAGATATTTGCAACGTTACTTCATTGTTGACTTCCTCTCTGTGTTGCCTTTGCCACAGATTGTCGTGTGGAGATATCTTCATGATCCAGCGCGCACAAAGGTATTAGCCACAAAAACGCAACTGTTGAACATTGTCATCCTCCAATATTTTCCAAGATTTCTACGCTTTCTACCTTTGGCCTCAGAGATTAGCAAGACAGCAGGTGTTTTTTCGGAGAATACTTTGGTCGGCGCCGCATATTACTTGACCTGGTACATGCTTGGTAGCCACATAACTGGGTCTGTATGGTACTTATTAGCTGTAGAACGTAATGACACGTGCTGGAGGAATGCTTGCATGGAGGAAGAGCGATGTTTCACGCATTTCTTGTACTGTGGGGGTTCAAATAAGCGTGCTACTGGCTATGAAGAATGGAGAAAGATTAGCCCAAAGATTCTTAAGGATAAGTGTTCCGCTGATGATGACGACGCCCCATTTGACTATGGAATTTTCAATCAAGCCATAACATCTAATATTGTTGCATCAATCAATTTCTTTCCTAAACTATGTTACTGTTTATGGTGGGGTGTCCAAAACATAAGCACACTTGGTCAAGGGCTTCAAGCTAGCACCTACGTTGGAGAAATTCTGTTTTGCATTTTATTAGCTGTTTTGGGGCTTGTCCTTTTTGCTGTTTTGATTGGAAAGATGCAGAACTTTCTTCAATCGATGTCTGTCCGTCTAGAGGAAATGAGGATCAGAAGACGTGACTCAGAGCAATGGATGCACCACCGCTTGCTTCCAGCGGAGCTAAGGGAAAAAGTTAGACGCTATGAAAAATGTAAATGGTTTAACACACGTGGAGTAGATGAAGAGAGCTTGGTTCAGAAACTTCCCAAAGATCTGAGGAGAGACATCAAACGATACCTTTGTTTGAATTTGGTTAGAAGGGTTCCTCTGTTTGCCAACATGGATGAGCGGTTGCTGGATGCGATATGCGAGCGACTGAAGCCATGTCTGCATACAAAGGGGACATGCATAATAAGGGAAGGGGATCCGGTGAATGAGATGTTGTTCATTGTACGTGGCCAACTTGAGAGCGTGACGACGGACGGCGGAAGAAGTGGATTCTTCAACAGAGGTTTTCTGAAAGAAGGTGACTTCTGTGGAGAAGAGCTGTTAACATGGGCACTGGACCCAAAATCATCGTCGAATTTACCGTCATCTACAAGGACTGTGAAGGCCATGGATGAAATGGAGGCATTCGCTCTGGAGGCAGAGGAGCTCAAGTTTGTTGCTTCCCAGTTCAGGCGCCTTCACAGCAGGCAGGTTCAGCACACCTTCCGTTTCTACTCCCAGCAGTGGCGGACTTGGGCTGCCATCTTCATCCAGGCTGCCTGGAGGCGCCACCAGAGGAGGAAAATTGCATCCATGCACCACATCAACAAGCTTgatgatgatgacgatgatgatcaatcccatcatgatgatgatgacgacgacgatgatgatacaAAGGCCTTGATTCCATCTTCTTCCTTTTCATCTTCTACTGCTAATACTACTACTGCTGCTGCTGCTGCTGCTACTTCTACTATGCTTATTGGGTTAGATTCGGCTATGTATGCTTCCCGGTTTGCAACTAATTTGCGTGGGCAGAGGCCCCGTTCTTCCAGTTCGGAAGGCATCGGCCTTCCCCCCCAAAAGCCTCGAGAACCCGACTTCAGCCATCTTGATGATGATGATGACCAACGCTAA	2244	0.4434	MRKLRFNLKGLGPLPPTGGSGGIRRNDNASKSFRVGMRRGSNGLRVLGRSLKSGVTWASVFPEDLKVSERKIFDPQDKTLLQWNKFFQVLCIISVSFDPLFFYLPYFNHKSFCLAIDSSLASYAVTLRTIFDAIYILRISFQFRTAFIAPSSRVFGRGELVIDPAEIAKRYLQRYFIVDFLSVLPLPQIVVWRYLHDPARTKVLATKTQLLNIVILQYFPRFLRFLPLASEISKTAGVFSENTLVGAAYYLTWYMLGSHITGSVWYLLAVERNDTCWRNACMEEERCFTHFLYCGGSNKRATGYEEWRKISPKILKDKCSADDDDAPFDYGIFNQAITSNIVASINFFPKLCYCLWWGVQNISTLGQGLQASTYVGEILFCILLAVLGLVLFAVLIGKMQNFLQSMSVRLEEMRIRRRDSEQWMHHRLLPAELREKVRRYEKCKWFNTRGVDEESLVQKLPKDLRRDIKRYLCLNLVRRVPLFANMDERLLDAICERLKPCLHTKGTCIIREGDPVNEMLFIVRGQLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSSSNLPSSTRTVKAMDEMEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRHQRRKIASMHHINKLDDDDDDDQSHHDDDDDDDDDTKALIPSSSFSSSTANTTTAAAAAATSTMLIGLDSAMYASRFATNLRGQRPRSSSSEGIGLPPQKPREPDFSHLDDDDDQR	747

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip04g02188	747	MobiDBLite	consensus disorder prediction	712	726	-	-
	Aip04g02188	747	MobiDBLite	consensus disorder prediction	9	28	-	-
	Aip04g02188	747	Gene3D	Helix hairpin bin	405	473	-	-
	Aip04g02188	747	MobiDBLite	consensus disorder prediction	645	682	-	-
	Aip04g02188	747	Gene3D	Jelly Rolls	480	600	IPR014710	-
	Aip04g02188	747	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	25	740	-	-
	Aip04g02188	747	MobiDBLite	consensus disorder prediction	710	747	-	-
	Aip04g02188	747	SUPERFAMILY	cAMP-binding domain-like	412	602	IPR018490	-
	Aip04g02188	747	Pfam	Cyclic nucleotide-binding domain	505	592	IPR000595	-
	Aip04g02188	747	CDD	CAP_ED	482	613	IPR000595	-
	Aip04g02188	747	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED	25	740	-	-
	Aip04g02188	747	Pfam	Ion transport protein	83	409	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Aip04g02188	747	MobiDBLite	consensus disorder prediction	652	667	-	-
	Aip04g02188	747	SUPERFAMILY	Voltage-gated potassium channels	75	404	-	-
	Aip04g02188	747	ProSiteProfiles	cAMP/cGMP binding motif profile.	482	579	IPR000595	-
	Aip04g02188	747	Gene3D	-	85	404	-	-
	Aip04g02188	747	SMART	cnmp_10	482	613	IPR000595	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip04g02188	Aip-Chr4	101863557	101866314	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip04g02188	21	737	Ion Channels	AT1G15990	63.712	0.0	924

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip04g02188	K05391		-	gmx:100810453	1015.37