Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02173 ATGCAGGGCCAAAGTTTACATTCACATGGGGGAACCTTGCCACCTTTACATCCAAGCCTCCCACATGCTCCATCACAAATGATGTCTCATCCCTATACCGATGCTTCGGTGACAAGTCAACCACCACCTGCATATCTTAATTTGATTAGTTCACTAGTGAACCACGGTGTGATCTCGGTAACTAATCCACCCACCAATCCACCCACCGGACTGGATTCCATTGGGACAGAGTTCGATCCAGATATCTTGAAGGTTCGTCATGAAGGTGTAATCAGTGCCTTATACGGTGATCTTTCTAGACAATGCACGAGCTGCGGTCTCCGATTCAAAAAGCAAGATGAGCACAGTAGACATATGGATTGGCACGTGACTAGGAACCGAATGTCGAAAAGCCGGAGCAGAAGGGGTCTCAAAAGTGAGGGCTTCGATGAGTTTTACAGCGACGAAATGGATGAGTGGATGTATAGAGGAGCCACATACCTTAAGGCACCCATGGGAACAACATTGGCCACCATGGACAGACATCAACTAGGACCCATTGTTCATTCCAAATGCAGATCTGACTCTGACTCTACTATGCCCTCAACCAATAGGGAACCTACCAAGGGAGTAGTAAGAGAAAAAGATTGCGGGTCGACCAAACATCAGTTTTGTGCACCCTTAATTAGGACTTACTAA 678 0.4676 MQGQSLHSHGGTLPPLHPSLPHAPSQMMSHPYTDASVTSQPPPAYLNLISSLVNHGVISVTNPPTNPPTGLDSIGTEFDPDILKVRHEGVISALYGDLSRQCTSCGLRFKKQDEHSRHMDWHVTRNRMSKSRSRRGLKSEGFDEFYSDEMDEWMYRGATYLKAPMGTTLATMDRHQLGPIVHSKCRSDSDSTMPSTNREPTKGVVREKDCGSTKHQFCAPLIRTY 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02173 225 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 15 133 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aip04g02173 225 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 137 190 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aip04g02173 225 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Aip04g02173 225 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 137 190 - -
Aip04g02173 225 MobiDBLite consensus disorder prediction 184 208 - -
Aip04g02173 225 MobiDBLite consensus disorder prediction 1 38 - -
Aip04g02173 225 MobiDBLite consensus disorder prediction 185 199 - -
Aip04g02173 225 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 15 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02173 Aip-Chr4 101354530 101355983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02173 9 190 C2H2 Transcription Factor Family AT4G04885 41.079 4.13e-46 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02173 K14400 - ahf:112721559 285.034