Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02172 ATGACGAATGGTATTACGCACGAGCCTTCTCCTTCCATGCTCGTTGGCCGGTTTAACGCCTTACTTCCACAGCGCCAAGGCTACCTCAAGGCTTTCTCTACCAAAGAAATTATTCGGACATATGGGCTCTTGTTGTCAGAACTCACCTCCAACGTGAACCCTATCATTACGGATCTCACTATCATTGCCGGCCAGCAGAGGAAACACGCCAAGGGCATCGCCGATGCCATTTGCAACCGGATTCTTGAGGTTGGTGGTGATAGGTTGGACTCAATGGAAACTGTAGGTAATACAAGAGAAAGAGGGTTGAATGAATGGCAGCAAAAGAGATTTTCTAGTGATGGTTGGAACATATTTCAAACTTCCAAGACTTATAATCTCAATGATGAACAACAAGGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTAACAAAGGCTCTGAAATTCCTAGTACTAAGCTTTTGTTGGTGGAGCAGCCTGGCAGAAATGGTTTAAGGAGCAAGTTTTTATTGGCATCATGGCAGGACACTGAAGAAGAGGAGTATGATTGGAAAGATAATTctatgatgcacggacactga 588 0.4269 MTNGITHEPSPSMLVGRFNALLPQRQGYLKAFSTKEIIRTYGLLLSELTSNVNPIITDLTIIAGQQRKHAKGIADAICNRILEVGGDRLDSMETVGNTRERGLNEWQQKRFSSDGWNIFQTSKTYNLNDEQQGQSPRALIEAYGCNKGSEIPSTKLLLVEQPGRNGLRSKFLLASWQDTEEEEYDWKDNSMMHGH 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02172 195 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 128 190 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aip04g02172 195 SUPERFAMILY ENTH/VHS domain 34 84 IPR008942 -
Aip04g02172 195 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 11 83 - -
Aip04g02172 195 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 11 83 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aip04g02172 195 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 128 190 - -
Aip04g02172 195 Gene3D - 29 89 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02172 Aip-Chr4 101351462 101353602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02172 14 84 C2H2 Transcription Factor Family AT4G04885 53.247 1.60e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02172 K14400 - aip:107640327 297.36