Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02145 ATGCCTACCCCTGTTCAGATGCAAGCAATCCCTGCCGCTTTGACGGGAAAAAGCACGCTTGTTCTGGCTGAGACAGGATCTGGAAAGTCTGCTTCGTTTCTTATTCCAATAATTTCTCGATGTGCAAGTCATCGCCTTGTATTTACTTCAGATAAGAAGCCTTTAGCAATGGTGTTGACACCTACCAGAGAGCTTTCTATACAGGTTGAAGAGCATGCAAAGTTGCTCGGAAAGGGGTTACCATTTAAAACTGCCCTTGTGGTTGGTGGTGAGGCCATGGCTAGACAACTCTATCGCTTTCAGCAAGGAGTTGAACTGATTGTGGGAACACCAGGAAGGCTTGTCGATCTTTTAACAAAGCATGAGATTGACTTAGATAATGTGATGACTTTTGTTTTGGATGAAGTTGATTGCATGCTTCAAAGGGGTTTCAGAGATCAGGTCATACAGATATACAGGGCTCTGTCACAACCTCAGGTCTTGATGTATTCTGCAACAATGTCTCATGATTTAGAGAAGATGGCAAATTCTCTTGCGAATGGTGTGTCGGTTATCTCTGTTGGGAAGGTGAATAGCCCAAATAAGGCTGTGAAGCAGGTCGCTATTTGGGTTGAGTCAAAGCAAAAGAAGCAGAAGCTGTTTGACATATTACTGAGTAGGCAACATTTTAAGCCACCTGCCGTAGTGTATGTGGACTCCAGACTTGGAGCAGATCTTCTGGCAAATGCAATAAAAGTTGCCACAGGAATTACAGCTAACTCAATTCATGGAGAGAAGTCCATGAAGGAAAGGAGAGATATAATGCAGTCACTTTTGGTTGGTGAGGTTCCGGTGGTTGTGGCTACTGGAGTTTTGGGTAGGGGAGTTGACCTATTGGGTGTGAGGCAGGTAATTGTGTTTGACATGCCAAATTCTATTAAGGAGTACATACATCAGATTGGAAGGGCATCTAGGATGGGAGGGGAAGGTGAAGCCATAGTTTTTGTGAATGAGGAGAGCAAGAATGTCTTTGCAGATTTAGTTGATGTATTAAAATCTGGTGGAGCAGCTGTTCCCCGGGAGCTTGCCAATTCACGGTATACCACTGGATTTTTTCCTGGTGGCAAGGGTTCAAAGAAGCGAAAGCATGGATAA 1134 0.4418 MPTPVQMQAIPAALTGKSTLVLAETGSGKSASFLIPIISRCASHRLVFTSDKKPLAMVLTPTRELSIQVEEHAKLLGKGLPFKTALVVGGEAMARQLYRFQQGVELIVGTPGRLVDLLTKHEIDLDNVMTFVLDEVDCMLQRGFRDQVIQIYRALSQPQVLMYSATMSHDLEKMANSLANGVSVISVGKVNSPNKAVKQVAIWVESKQKKQKLFDILLSRQHFKPPAVVYVDSRLGADLLANAIKVATGITANSIHGEKSMKERRDIMQSLLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYIHQIGRASRMGGEGEAIVFVNEESKNVFADLVDVLKSGGAAVPRELANSRYTTGFFPGGKGSKKRKHG 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02145 377 Gene3D - 1 186 IPR027417 -
Aip04g02145 377 Gene3D - 187 361 IPR027417 -
Aip04g02145 377 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 360 - -
Aip04g02145 377 Pfam DEAD/DEAH box helicase 3 173 IPR011545 GO:0003676|GO:0005524
Aip04g02145 377 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 1 360 - -
Aip04g02145 377 SMART ultradead3 2 200 IPR014001 -
Aip04g02145 377 CDD SF2_C_DEAD 197 329 - -
Aip04g02145 377 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 10 185 IPR014001 -
Aip04g02145 377 SMART helicmild6 238 320 IPR001650 -
Aip04g02145 377 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 336 IPR027417 -
Aip04g02145 377 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 196 359 IPR001650 -
Aip04g02145 377 Pfam Helicase conserved C-terminal domain 211 320 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02145 Aip-Chr4 99916825 99920327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02145 2 357 Eukaryotic Initiation Factors Gene Family AT3G19760 29.640 1.31e-53 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02145 K19466 - gmx:100784491 603.594