Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02141 ATGGGAAACTGCTGCAGATCTCCGGCCGCCGTCGCCCGCGAGGACGTCAAATCCAGCTTCTCCGACCACCACGCTAAGCGTGCTGCTGCTGGAGACTCCTCCGCCGCCGGAGGCATCGGTGGGAAGAAGAAGCCTCCTCCGATCACCGTCCTCACCGGCGTTCCCAAAGAGAACATCGAGGACCGGTACCTGGTAGACCGCGAGCTCGGCCGTGGCGAGTTCGGAGTGACGTACCTCTGCATCGACCGCGAGACGCGGGAGTTGCTCGCGTGCAAGAGCATCTCGAAGCGGAAGCTCCGCACTGCCGTGGACGTTGAGGACGTCCGTCGCGAGGTGGCAATCATGCGCCACCTGCCGCGAAGCCCGTCCATCGTGTCGCTCCGGGAGGCCTGCGAGGATGACAATGCAGTCCATCTCGTCATGGAACTCTGTGAGGGCGGTGAGCTCTTTGACCGAATCGTTGCCAGGGGTCATTATACGGAGAGGGCGGCCGCAGCGGTTGCACGGACCATCGTGGAGGTAGTGCAGCTTTGCCACAAGCACGGGGTGATCCACAGGGACCTCAAGCCAGAGAATTTCTTGTTTGCTAATAAGAAGGAGAACTCGCCTCTCAAGGCTATCGATTTTGGGTTGTCCATATTCTTCAAGCCAGGTGAGAGGTTCTCAGAAATTGTTGGAAGTCCTTATTATATGGCTCCAGAGGTGCTCAAGCGGAACTATGGGCCAGAGATAGATATATGGAGTGCGGGAGTGATTCTCTATATCTTATTGTGTGGTGTTCCCCCATTTTGGGCTGAATCTGAACAAGGGGTTGCACAGGCCATTCTTCGAGGGCTTATAGATTTCAAACGGGAACCTTGGCCCAGTATTTCTGAAAGTGCTAAAAGTCTTGTTAGGCAAATGTTAGAACCAGACCCTAAGCTTCGATTAACTGCCAAACAAGTGCTCGAGCATCCTTGGCTACAAAATGCTAAAAAGGCTCCTAATGTTCCTCTTGGAGATGTTGTCAAGTCAAGGCTTAAGCAATTTTCGATGATGAACAGATTCAAAAGAAAAGCCCTTAGGGTCATTGCTGATTTCTTATCTAATGAAGAAGTTGAAGACATTAAAGATATGTTCAAGAAAATGGATAGTGATAATGACGGTATCGTTTCCATTGAAGAATTGAAAGCTGGATTTCAAAATTCTGGATCCCAACTTGCTGAGTCTGAAGTTCAGATGTTTATTGAGGCTGTAGATAATAACGGGAAGGGAACACTTGACTACGGAGAATTTGTTGCTGTTTCTCTTCATTTAAAAAGGATGGCTAACGATGAGCATCTTCGCAAGGCCTTCTCATATTTTGACAAGGATGGGAATGGATATATTGAACCTGAAGAGCTACGAAATGCCTTAATGGAAGATGGAGCAGACGACTGTACAGATGTAGCAAATGATATTTTCCAAGAAGTAGACACGGACAAGGATGGACGTATCAGCTATGATGAGTTTGTGGCTATGATGAAAACTGGAACAGATTGGCGGAAAGCATCTAGGCATTACTCACGCGGTAGATTCAACAGCTTGAGCTTGAAATTGATGAAAGACGGTTCTTTAAACATAGGAAATGAGCAGTTATCTTGA 1623 0.488 MGNCCRSPAAVAREDVKSSFSDHHAKRAAAGDSSAAGGIGGKKKPPPITVLTGVPKENIEDRYLVDRELGRGEFGVTYLCIDRETRELLACKSISKRKLRTAVDVEDVRREVAIMRHLPRSPSIVSLREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVARTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGERFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISESAKSLVRQMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSNEEVEDIKDMFKKMDSDNDGIVSIEELKAGFQNSGSQLAESEVQMFIEAVDNNGKGTLDYGEFVAVSLHLKRMANDEHLRKAFSYFDKDGNGYIEPEELRNALMEDGADDCTDVANDIFQEVDTDKDGRISYDEFVAMMKTGTDWRKASRHYSRGRFNSLSLKLMKDGSLNIGNEQLS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02141 540 Pfam Protein kinase domain 65 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02141 540 ProSitePatterns EF-hand calcium-binding domain. 377 389 IPR018247 -
Aip04g02141 540 SUPERFAMILY EF-hand 350 528 IPR011992 -
Aip04g02141 540 ProSitePatterns EF-hand calcium-binding domain. 485 497 IPR018247 -
Aip04g02141 540 CDD EFh 440 502 IPR002048 GO:0005509
Aip04g02141 540 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Aip04g02141 540 Gene3D Phosphorylase Kinase; domain 1 64 148 - -
Aip04g02141 540 Pfam EF-hand domain pair 367 427 IPR002048 GO:0005509
Aip04g02141 540 Pfam EF-hand domain pair 439 502 IPR002048 GO:0005509
Aip04g02141 540 SMART efh_1 476 504 IPR002048 GO:0005509
Aip04g02141 540 SMART efh_1 440 468 IPR002048 GO:0005509
Aip04g02141 540 SMART efh_1 404 432 IPR002048 GO:0005509
Aip04g02141 540 SMART efh_1 368 396 IPR002048 GO:0005509
Aip04g02141 540 SMART serkin_6 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02141 540 Gene3D - 330 505 - -
Aip04g02141 540 Gene3D Transferase(Phosphotransferase) domain 1 149 329 - -
Aip04g02141 540 PANTHER SERINE/THREONINE-PROTEIN KINASE 10 518 - -
Aip04g02141 540 ProSiteProfiles EF-hand calcium-binding domain profile. 472 507 IPR002048 GO:0005509
Aip04g02141 540 CDD STKc_CAMK 62 320 - -
Aip04g02141 540 ProSiteProfiles EF-hand calcium-binding domain profile. 364 399 IPR002048 GO:0005509
Aip04g02141 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Aip04g02141 540 ProSiteProfiles Protein kinase domain profile. 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02141 540 SUPERFAMILY Protein kinase-like (PK-like) 47 346 IPR011009 -
Aip04g02141 540 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Aip04g02141 540 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 13 10 518 - -
Aip04g02141 540 MobiDBLite consensus disorder prediction 15 47 - -
Aip04g02141 540 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Aip04g02141 540 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02141 Aip-Chr4 99845028 99849660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02141 1 534 EF-hand Containing Proteins AT1G74740 68.352 0.0 756
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Aip04g02141 Pkinase 2.8e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02141 K13412 - gmx:100783922 992.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02141 04 99845028 99849660 Aip04g02141 04 99845028 99849660 ECH