Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02133 ATGGAAATGTCTTCGAGCCCTCGCACCGTTGAAGAGATCTTCAAGGACTACAGCGCTCGTAGAACCGCTGTTGTTCGTGCACTCACTCAAGATGTTGATGAATTTTACGGCCTCTGTGATCCAGACAAGGAGAACTTGTGCCTTTATGGACATCCAAATGAATCATGGGAAGTAACTCTGCCAGCAGAGGAGGTTCCACCGGAGCTTCCTGAGCCAGCACTTGGAATCAATTTTGCTAGAGATGGCATGAACCGCAGGGACTGGCTTTCTTTGGTTGCGGTTCACAGTGACTCATGGCTGCTTTCTGTGGCCTTCTATCTTGGAGCTCGTCTTAACCGCAATGAGAGGAAGCGTTTATTTAGCTTGATCAATGATCTTCCCACTGTTTTTGAGGTTGTGACTGACAGAAAACCAAGCAAGGACAAACCCACTGTGGATAGTGGGAGCAAATCTCGGGGAAGCACCAAGAGGTCAAGTGACGGGCAAGTTAAAAGCAACCCAAAGTTTGCAGATGAGGGTTATGAGGAGGATGAAGATGAGCACAGCGAAACCCTCTGTGGTAGCTGTGGCGGAAATTACAACGCAGATGAATTCTGGATTGGCTGTGATATTTGTGAGAGATGGTTCCATGGGAAATGTGTGAAGATTACCCCGGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCGTCATGCAACATGAGGCGGAGCAGGCCCTAG 720 0.4847 MEMSSSPRTVEEIFKDYSARRTAVVRALTQDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTDRKPSKDKPTVDSGSKSRGSTKRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCNMRRSRP 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02133 239 MobiDBLite consensus disorder prediction 148 165 - -
Aip04g02133 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Aip04g02133 239 SMART PHD_3 185 233 IPR001965 -
Aip04g02133 239 MobiDBLite consensus disorder prediction 134 176 - -
Aip04g02133 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Aip04g02133 239 PANTHER CPG BINDING PROTEIN 3 238 IPR045104 GO:0006355|GO:0042393
Aip04g02133 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
Aip04g02133 239 CDD PHD_AL_plant 185 235 IPR044104 -
Aip04g02133 239 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 238 - -
Aip04g02133 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 233 IPR013083 -
Aip04g02133 239 Pfam PHD-finger 186 233 IPR019787 -
Aip04g02133 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02133 Aip-Chr4 99245338 99249798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02133 4 238 Alfin-like Transcription Factor Family AT5G05610 76.695 2.12e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Aip04g02133 Alfin 6e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02133 - - gmx:100793126 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02133 04 99245338 99249798 Aip04g02133 04 99245338 99249798 ECH
Aip04g02133 04 99245338 99249798 Aip02g02269 02 94732803 94736937 PCT