Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02130 ATGGCTGTCTCACTATGGAGAGCTCGCTTAGCTTCCTCTCTTGTCGCCAATCTCACCAACACTCTTCGCCGTTTCTCTTCCGACACAAATGCTCATAATGCTCGAGAGAGCATGATGAATCAGATGATGTATTCCGATATAAATTCTCGAATTGGGAGTTGTATGCCATTATCTTCTATGCGAATTGGAACTATCATTCACAATATCGAATTGAACCCGGGGCAAGGTGGCAAGCTGGTTAGAGCTGCTGGAACTTGTGCAAAAATCCTGAAAGAACCCACATCAAAATACTGTCTTATCCAGCTCCCCTCGGGTGTTAAAAAAATGATTGATTCTCGTTGCAGGGCCACCGTTGGTACTGTCTCAAATCCAAGCCACGGAGATAAGAAGCTTAGGAAGGCTGGACAAAGCCAGTGGCTTGGCCGGAGACCAGTTGTTCGAGGAGTGGCCATGAATCCAGTAGACCATCCTCATGGTGGAGGAGAGGGTAAGAGCAAGAGTAGTGGTCGGTGGGGAAAAGGATCTCGAACTCCTTGGGGTAAGCCGACTAAGAGTGGATTCAAGACCGGGCCCCTGAAACGCAGGAAGTAG 591 0.4839 MAVSLWRARLASSLVANLTNTLRRFSSDTNAHNARESMMNQMMYSDINSRIGSCMPLSSMRIGTIIHNIELNPGQGGKLVRAAGTCAKILKEPTSKYCLIQLPSGVKKMIDSRCRATVGTVSNPSHGDKKLRKAGQSQWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGRWGKGSRTPWGKPTKSGFKTGPLKRRK 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02130 196 Gene3D - 40 121 IPR014722 -
Aip04g02130 196 Pfam Ribosomal Proteins L2, C-terminal domain 51 180 IPR022669 GO:0003735|GO:0005840|GO:0006412
Aip04g02130 196 Gene3D Ribosomal protein L2, domain 3 122 196 IPR014726 -
Aip04g02130 196 PANTHER RIBOSOMAL PROTEIN L2 37 196 IPR002171 GO:0003735|GO:0005840|GO:0006412
Aip04g02130 196 ProSitePatterns Ribosomal protein L2 signature. 144 155 IPR022671 GO:0003735|GO:0005840|GO:0006412
Aip04g02130 196 MobiDBLite consensus disorder prediction 150 196 - -
Aip04g02130 196 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 37 196 - -
Aip04g02130 196 SMART Ribosomal_L2_C_2 49 182 IPR022669 GO:0003735|GO:0005840|GO:0006412
Aip04g02130 196 SUPERFAMILY Translation proteins SH3-like domain 51 185 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02130 Aip-Chr4 99103464 99105479 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02130 24 161 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 40.816 4.33e-25 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02130 - - lang:109347761 318.931