Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02128 ATGGCCGAACTTCATTCCACTTCAAATTCAACTCTAACTCCTCCTCCGTCTACTTCCGCGGGTAACAATGAATCTTCTGGAGCTTCACCGTCGACTTCCCGAGGCCGTCGCAACGATCAGAACGCCGCTGACCGATCTCAGGCTCGATTCCGGTCGCCTGAAATTGAACCGATCGTTGGCCATGCTGGCAGAGTCATTGGCTGGGGAATCGGGGACGAGTCGTCGTCTGTTAGGGAAGATGCATGGTCATGCTTTGCTGTTGTATTCATGTTTTGGTTTTTCGTGTCGGTGACTATAATACTTGGGGTTTATGGGTCCATGAATCTCTTGCTTGGTCCAGAAACATCGATTGTGTTCCAACCTAGCCCTCTGTTCGTGCAATATCTCAGGGTAGAAAACTTAGAAGAAAAGCCAGGTCCTGTCGTGTATGGTACTTACCAATATCCAGATCTTGATGTTATTACCACTTGGGAACAAACTCTGCATGAATGGATTTATTATCTGAATACAGGTTCAGAAGTGAATATTTCATATCATTTGAGCCCTGTGAGCTCGTCCGTTCTCCTTATAATTGCAGATGGGGCTGAAAGCCTCGCTCAGTGGATTGAATACCCTACATACCGTAATTCAACTCTCTCATGGAACATGATCCATGGTATGACAAAGGTAAAGATAAATTTTATACTCATATTAAACCTATGTTTGATGCTCATTTATTTTTTCACAGGAGCTGGTATGATTACACAGAAAATACACAGGTCGTCGAGCTATTATGTAGCGTTGGGAAATTTGGATGAGGTGGTGCAGGTGGAACTAAACCTCACAGTTAGGGCCTACTTGCACAATACAAAGAATGCTTACTACAAATATGCCTTGGCAAGTAGAAGTTCGTGCAGTTTGAGCATTTTCTTTCCACAAGGAAACGCAGCTATCTTGACTACTCCTGGTCCACAAAAGAATGCATCAGATGATGAATGGTACGTCAAAGTGACCTATGGACCTAGATGGATCACATATATTGTAGGCATAGGTGGATTGACTTTGCTTATGTTTTGGGCATTCAACCTCTTGAACAATCTCCAGTTTGCCCGTGAAGAAAGATCAGGAGTTATGAACAATGGGACGGCACCTGATAGAGGCCCTTTGCGCTCTCGAAAAGATGATGACCTTTCCAGCTGGGGTTCATCATATGATTCACTGTCACAAGATGACGAAGATCTTGACTCTCAGGCCGGAGGTTCCGCGGAGGGGAAGTCTCTAGGTGATGGAGAAATTAGTAACAATACTCGGCGTCTCTGTGCCATTTGCTTTGATGCTCCGAGGGATTGTTTCTTTCTTCCTTGTGGGCACTCTGCAGCTTGTTTTGAATGTGGAACTAGGATCGCCGAGGCTGCTGGTACTTGCCCTGTTTGTCGTAGGAACATGAAGAAAGTGAGAAAGATTTTTACTGTTTGA 1455 0.4474 MAELHSTSNSTLTPPPSTSAGNNESSGASPSTSRGRRNDQNAADRSQARFRSPEIEPIVGHAGRVIGWGIGDESSSVREDAWSCFAVVFMFWFFVSVTIILGVYGSMNLLLGPETSIVFQPSPLFVQYLRVENLEEKPGPVVYGTYQYPDLDVITTWEQTLHEWIYYLNTGSEVNISYHLSPVSSSVLLIIADGAESLAQWIEYPTYRNSTLSWNMIHGMTKVKINFILILNLCLMLIYFFTGAGMITQKIHRSSSYYVALGNLDEVVQVELNLTVRAYLHNTKNAYYKYALASRSSCSLSIFFPQGNAAILTTPGPQKNASDDEWYVKVTYGPRWITYIVGIGGLTLLMFWAFNLLNNLQFAREERSGVMNNGTAPDRGPLRSRKDDDLSSWGSSYDSLSQDDEDLDSQAGGSAEGKSLGDGEISNNTRRLCAICFDAPRDCFFLPCGHSAACFECGTRIAEAAGTCPVCRRNMKKVRKIFTV 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02128 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 484 IPR013083 -
Aip04g02128 484 Pfam Domain of unknown function (DUF4792) 139 198 IPR032008 -
Aip04g02128 484 SMART ring_2 433 471 IPR001841 -
Aip04g02128 484 Pfam Domain of unknown function (DUF4793) 246 352 IPR032010 -
Aip04g02128 484 ProSiteProfiles Zinc finger RING-type profile. 433 472 IPR001841 -
Aip04g02128 484 MobiDBLite consensus disorder prediction 1 37 - -
Aip04g02128 484 Pfam Zinc finger, C3HC4 type (RING finger) 430 478 - -
Aip04g02128 484 SUPERFAMILY RING/U-box 432 478 - -
Aip04g02128 484 PANTHER OS05G0521000 PROTEIN 2 484 IPR044586 GO:0004842
Aip04g02128 484 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 2 484 - -
Aip04g02128 484 MobiDBLite consensus disorder prediction 1 50 - -
Aip04g02128 484 MobiDBLite consensus disorder prediction 370 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02128 Aip-Chr4 98995890 99001888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02128 412 481 C3H Transcription Factor Family AT3G06140 28.571 5.28e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02128 - - ahf:112743648 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02128 04 98995890 99001888 Aip04g02128 04 98995890 99001888 ECH