Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip04g02117 | ATGCGTAGCCGCCTGTTTCCGGGCAAAAACCGGAAGGTCGACCGAACCGCGCCGTCGCAACTCGTCGAATCATCTCAGCCGTGTCGGTTCTATTCCACTTCCGCCGCGCTCCAACTGTCCTCTGTTTCAGTCCCGTCGCCTGTGTCTTCTAGTTTGAGTTCCTCATCTGTGCTCCCTCTCTCTCGTCTGTTTGAGTTCCGGGCCTCATCTATTCTCCCTCTCCCTCTTCTGTGTTCGAGTTCCAGCCCAATTGAAAGGTCAGATTTCATCTTCGAAGCTTTGCTAGGCAACAATGTGGCTGGGGTTGACAACACCTTCAGAAGAAAATTCGATCGAGAAGAGTATTTGGAACGAGCTCGGGAGCGTGAGAGGCAGGAGGAGGAGGGTCGATCTAAATCTAAAGCTAAAGGTCCTCCAGTGCAGAGGAAACCCCTAAAACATAGAGATTATGAAGTCGACCTCGAGTCCCGCCTAGGCAAGACTCAAGTTGTTACGCCGGTTGCACCACTGAGTCAGCAGGCTGGATATTACTGCTCTGTTTGTGAGTGTGTGGTAAAGGACTCAGCGAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTTTGGGCATGTCTATGCGAGTTGAACGAGCCTCTCTCCAACAGGTTCAGGAACGATTTGAGGTTCTTAAGAAACGTAAAGATCTTGGCACATTCACCGAGCAAGATCTTGACGAAAGGGTTCTAAAACAGCAGCAAGAAGAGGAAGAAAGAAAACGATTACGTCGTGAAAAGAAGAAGGAAAAGAAAGAGAAGGCAGTGGAAGAACCGGAAATTGATCCTGATGTTGCGGCCATGATGGGGTTTGGTGGTTTCCGGTCATCAAAGAAATGA | 879 | 0.4881 | MRSRLFPGKNRKVDRTAPSQLVESSQPCRFYSTSAALQLSSVSVPSPVSSSLSSSSVLPLSRLFEFRASSILPLPLLCSSSSPIERSDFIFEALLGNNVAGVDNTFRRKFDREEYLERARERERQEEEGRSKSKAKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLQQVQERFEVLKKRKDLGTFTEQDLDERVLKQQQEEEERKRLRREKKKEKKEKAVEEPEIDPDVAAMMGFGGFRSSKK | 292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip04g02117 | 292 | SUPERFAMILY | beta-beta-alpha zinc fingers | 172 | 213 | IPR036236 | - | |
| Aip04g02117 | 292 | SMART | ZnF_U1_5 | 173 | 207 | IPR003604 | GO:0003676|GO:0008270 | |
| Aip04g02117 | 292 | MobiDBLite | consensus disorder prediction | 118 | 135 | - | - | |
| Aip04g02117 | 292 | Pfam | Zinc-finger of C2H2 type | 176 | 200 | - | - | |
| Aip04g02117 | 292 | Coils | Coil | 239 | 271 | - | - | |
| Aip04g02117 | 292 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Aip04g02117 | 292 | MobiDBLite | consensus disorder prediction | 246 | 292 | - | - | |
| Aip04g02117 | 292 | Gene3D | Classic Zinc Finger | 171 | 208 | - | - | |
| Aip04g02117 | 292 | PANTHER | ZINC FINGER MATRIN-TYPE PROTEIN 2 | 100 | 292 | IPR040107 | GO:0000398|GO:0005681 | |
| Aip04g02117 | 292 | MobiDBLite | consensus disorder prediction | 246 | 274 | - | - | |
| Aip04g02117 | 292 | MobiDBLite | consensus disorder prediction | 118 | 147 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip04g02117 | Aip-Chr4 | 98385448 | 98394428 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip04g02117 | 97 | 238 | C2H2 Transcription Factor Family | AT3G05760 | 83.099 | 7.74e-84 | 247 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip04g02117 | K12848 | - | gmx:100527057 | 305.064 |