Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02102 ATGGGGTTTAGTTTCAAGAGAAGGAAGAAGGAGCAAGATGGAGGGGGTGGAGATATCACTAGGTCTTTCAAGGATTCACTTAAAGCTCTTGAAGCTGACATCCAATTTGCCAATACACTAGCTTCTGGGTATCCATGCGAGCGCGATGGTTCTCGCTTCCAAATGAGGTTATCATATAGCCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAATGGACCGATTGTCACCTTGCCGGAGCACTGGGATTGCTTAGAATTCTTATATACAAGGCATGTGCTGATGGTAAGACAACCATTTCGATTTATGAACGAAAAGCGAGCCTGAAGGAGTTCTACCGTGTGTTGTTTCCCTCTTTATTGCAACTCAACGGAGGAATCAGTGATGTTGAAGACAGGAAACAAAAACATTTGTGTGCTACTAAGTACAAGACAAGAGACATGACAAGCAAGGGAAAGGTCTCTGAAATCGAGATAGAGAGAGAAGAAGAATGTGGCATTTGCCTGGAGATGAACGGCACGGTTGTGTTGCCGAGTTGCAATCACTCGATGTGTATGAAATGCTATGAAGATTGGTGGGGAAGATCTCAATCTTGCCCTTTCTGTAGAGAAAGTCTTGAAGGAGTAAAGTCTGGTGATCTTTGGATCTACATAAACAAGAGTGAAATTGATGATTTGGCTTCAATCACCAAAGAGAATTTGAAGAGATTATTTATGTACATACAAAGATTGCCCATCATTGTGCCAGACCCCCCTATATCGGTTTCATACCATCATCGCTGGTGA 783 0.4266 MGFSFKRRKKEQDGGGGDITRSFKDSLKALEADIQFANTLASGYPCERDGSRFQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKACADGKTTISIYERKASLKEFYRVLFPSLLQLNGGISDVEDRKQKHLCATKYKTRDMTSKGKVSEIEIEREEECGICLEMNGTVVLPSCNHSMCMKCYEDWWGRSQSCPFCRESLEGVKSGDLWIYINKSEIDDLASITKENLKRLFMYIQRLPIIVPDPPISVSYHHRW 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02102 260 SMART ring_2 164 201 IPR001841 -
Aip04g02102 260 PANTHER RING FINGER PROTEIN 41, 151 11 247 - -
Aip04g02102 260 SUPERFAMILY RING/U-box 153 205 - -
Aip04g02102 260 Pfam Zinc finger, C3HC4 type (RING finger) 161 207 - -
Aip04g02102 260 MobiDBLite consensus disorder prediction 1 20 - -
Aip04g02102 260 ProSitePatterns Zinc finger RING-type signature. 179 188 IPR017907 -
Aip04g02102 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 211 IPR013083 -
Aip04g02102 260 ProSiteProfiles Zinc finger RING-type profile. 164 202 IPR001841 -
Aip04g02102 260 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 11 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02102 Aip-Chr4 97729594 97733219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02102 108 213 C3H Transcription Factor Family AT5G01960 31.532 6.48e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02102 K25840 - gmx:100814293 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02102 04 97729594 97733219 Aip04g02102 04 97729594 97733219 ECH
Aip04g02102 04 97729594 97733219 Aip02g02256 02 94435088 94435741 PCT