Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aip04g02102 | ATGGGGTTTAGTTTCAAGAGAAGGAAGAAGGAGCAAGATGGAGGGGGTGGAGATATCACTAGGTCTTTCAAGGATTCACTTAAAGCTCTTGAAGCTGACATCCAATTTGCCAATACACTAGCTTCTGGGTATCCATGCGAGCGCGATGGTTCTCGCTTCCAAATGAGGTTATCATATAGCCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAATGGACCGATTGTCACCTTGCCGGAGCACTGGGATTGCTTAGAATTCTTATATACAAGGCATGTGCTGATGGTAAGACAACCATTTCGATTTATGAACGAAAAGCGAGCCTGAAGGAGTTCTACCGTGTGTTGTTTCCCTCTTTATTGCAACTCAACGGAGGAATCAGTGATGTTGAAGACAGGAAACAAAAACATTTGTGTGCTACTAAGTACAAGACAAGAGACATGACAAGCAAGGGAAAGGTCTCTGAAATCGAGATAGAGAGAGAAGAAGAATGTGGCATTTGCCTGGAGATGAACGGCACGGTTGTGTTGCCGAGTTGCAATCACTCGATGTGTATGAAATGCTATGAAGATTGGTGGGGAAGATCTCAATCTTGCCCTTTCTGTAGAGAAAGTCTTGAAGGAGTAAAGTCTGGTGATCTTTGGATCTACATAAACAAGAGTGAAATTGATGATTTGGCTTCAATCACCAAAGAGAATTTGAAGAGATTATTTATGTACATACAAAGATTGCCCATCATTGTGCCAGACCCCCCTATATCGGTTTCATACCATCATCGCTGGTGA | 783 | 0.4266 | MGFSFKRRKKEQDGGGGDITRSFKDSLKALEADIQFANTLASGYPCERDGSRFQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKACADGKTTISIYERKASLKEFYRVLFPSLLQLNGGISDVEDRKQKHLCATKYKTRDMTSKGKVSEIEIEREEECGICLEMNGTVVLPSCNHSMCMKCYEDWWGRSQSCPFCRESLEGVKSGDLWIYINKSEIDDLASITKENLKRLFMYIQRLPIIVPDPPISVSYHHRW | 260 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aip04g02102 | 260 | SMART | ring_2 | 164 | 201 | IPR001841 | - | |
Aip04g02102 | 260 | PANTHER | RING FINGER PROTEIN 41, 151 | 11 | 247 | - | - | |
Aip04g02102 | 260 | SUPERFAMILY | RING/U-box | 153 | 205 | - | - | |
Aip04g02102 | 260 | Pfam | Zinc finger, C3HC4 type (RING finger) | 161 | 207 | - | - | |
Aip04g02102 | 260 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Aip04g02102 | 260 | ProSitePatterns | Zinc finger RING-type signature. | 179 | 188 | IPR017907 | - | |
Aip04g02102 | 260 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 211 | IPR013083 | - | |
Aip04g02102 | 260 | ProSiteProfiles | Zinc finger RING-type profile. | 164 | 202 | IPR001841 | - | |
Aip04g02102 | 260 | PANTHER | ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN | 11 | 247 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aip04g02102 | Aip-Chr4 | 97729594 | 97733219 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aip04g02102 | 108 | 213 | C3H Transcription Factor Family | AT5G01960 | 31.532 | 6.48e-08 | 51.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aip04g02102 | K25840 | - | gmx:100814293 | 367.081 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aip04g02102 | 04 | 97729594 | 97733219 | Aip04g02102 | 04 | 97729594 | 97733219 | ECH | |
Aip04g02102 | 04 | 97729594 | 97733219 | Aip02g02256 | 02 | 94435088 | 94435741 | PCT |