Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02100 ATGACGAAGGGCAAGGGGACCGTGAGGATCCCAAAGGAAGTGTTGAAGGCTGTCGATGACCGAAAGGTAGGAAAGCGAAAAGCCGCTGCCAAGCCTGACAAGAGTAGCGCACGGTCAAAGAAGGCAAAGAAAGATCCCAACAAACCCAAAAGGCCACCAAGTGCTTTCTTTGTGTTCCTTGAGGAGTTCAGAAAGACGTTCAAGGCAGAAAATCCTCATGTGAAGGCTGTATCAGCTGTTGGTAAAGCTGGAGGAGAAAAATGGAAGTCCATGAGTCCAGCTGAAAAAGCTACATATGAAGCCAAGGCTCAAAAAAGGAAGGCTGAATATGAAAAACAAATGAATGCTTATAATAAAAAGCAGCCAAGTTCAGCAGATGATGGAGATGAGGAATCAGACAAGTCCAAATCTGAAGTGCATGATGACGAGGAAGAAGGCAGTGCAGAGGAGGACCATCAAGAGGAGGATGACGATGACGATGACGACGAGGAGGAAGAGGAGGATGACGACGACGACGACTGA 522 0.4732 MTKGKGTVRIPKEVLKAVDDRKVGKRKAAAKPDKSSARSKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPHVKAVSAVGKAGGEKWKSMSPAEKATYEAKAQKRKAEYEKQMNAYNKKQPSSADDGDEESDKSKSEVHDDEEEGSAEEDHQEEDDDDDDDEEEEEDDDDDD 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02100 173 MobiDBLite consensus disorder prediction 143 173 - -
Aip04g02100 173 SUPERFAMILY HMG-box 35 119 IPR036910 -
Aip04g02100 173 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 160 IPR031061 -
Aip04g02100 173 Gene3D High mobility group box domain 32 133 IPR036910 -
Aip04g02100 173 MobiDBLite consensus disorder prediction 123 142 - -
Aip04g02100 173 CDD HMGB-UBF_HMG-box 49 114 - -
Aip04g02100 173 Coils Coil 100 120 - -
Aip04g02100 173 MobiDBLite consensus disorder prediction 1 53 - -
Aip04g02100 173 Pfam HMG (high mobility group) box 49 118 IPR009071 -
Aip04g02100 173 MobiDBLite consensus disorder prediction 70 173 - -
Aip04g02100 173 MobiDBLite consensus disorder prediction 99 114 - -
Aip04g02100 173 SMART hmgende2 48 119 IPR009071 -
Aip04g02100 173 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 49 118 IPR009071 -
Aip04g02100 173 MobiDBLite consensus disorder prediction 9 42 - -
Aip04g02100 173 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 2 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02100 Aip-Chr4 97661955 97665965 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Aip04g02100 HMG_box 1.3e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02100 K25507 - zju:107430832 179.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02100 04 97661955 97665965 Aip04g02100 04 97661955 97665965 ECH